More October, 2007 proteomics journal articles.- Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells.
by Bennett KP, Bergeron C, Acar E, Klees RF, Vandenberg SL, Yener B, Plopper GE.
Journal: BMC Genomics. 8(1):380
- Specificity Fingerprinting of Retaining beta-1,4-Glycanases in the Cellulomonas fimi Secretome Using Two Fluorescent Mechanism-Based Probes.
by Hekmat O, Florizone C, Kim YW, Eltis LD, Warren RA, Withers SG.
Journal: Chembiochem. :
- The roles of ring-hydroxylating dioxygenases in styrene and benzene catabolism in Rhodococcus jostii RHA1.
by Patrauchan MA, Florizone C, Eapen S, Gómez-Gil L, Sethuraman B, Fukuda M, Davies J, Mohn WW, Eltis LD.
Journal: J Bacteriol. :
- Integration of biological networks and gene expression data using Cytoscape.
by Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD.
Journal: Nat Protoc. 2(10):2366-82
- Broadening the Horizon - Level 2.5 of the HUPO-PSI Format for Molecular Interactions.
by Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stumpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H.
Journal: BMC Biol. 5(1):44
- Semi-supervised learning for peptide identification from shotgun proteomics datasets.
by Käll L, Canterbury JD, Weston J, Noble WS, Maccoss MJ.
Journal: Nat Methods. :
- Global Profiling of Phosphopeptides by Titania Affinity Enrichment.
by Wu J, Shakey Q, Liu W, Schuller A, Follettie MT.
Journal: J Proteome Res. :
- Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE.
by Xia K, Manning M, Hesham H, Lin Q, Bystroff C, Colón W.
Journal: Proc Natl Acad Sci U S A. :
- Identification, affinity characterisation and biological interactions of lectin-like peptide-carbohydrate complexes derived from human TNF-alpha using high-resolution mass spectrometry.
by Marquardt A, Bernevic B, Przybylski M.
Journal: J Pept Sci. :
- Critical roles for a genetic code alteration in the evolution of the genus Candida.
by Silva RM, Paredes JA, Moura GR, Manadas B, Lima-Costa T, Rocha R, Miranda I, Gomes AC, Koerkamp MJ, Perrot M, Holstege FC, Boucherie H, Santos MA.
Journal: EMBO J. :
- Influence of Binocular Competition on the Expression Profiles of CRMP2, CRMP4, Dyn I, and Syt I in Developing Cat Visual Cortex.
by Cnops L, Hu TT, Burnat K, Arckens L.
Journal: Cereb Cortex. :
- Identification of alpha-actinin 4 and 67 kDa laminin receptor as stage-specific markers in esophageal cancer via proteomic approaches.
by Fu L, Qin YR, Xie D, Chow HY, Ngai SM, Kwong DL, Li Y, Guan XY.
Journal: Cancer. :
- Optimized protein extraction for quantitative proteomics of yeasts.
by von der Haar T.
Journal: PLoS ONE. 2(10):e1078
- Identification of Human Cytomegalovirus UL84 viral and cellular encoded binding partners using Proteomics Analysis.
by Gao Y, Colletti K, Pari GS.
Journal: J Virol. :
- Evaluation and Integration of 49 Genome-wide Experiments and the Prediction of Previously Unknown Obesity-related Genes.
by English SB, Butte AJ.
Journal: Bioinformatics. :
- The ecogenetics and ecogenomics of plant-herbivore interactions: rapid progress on a slippery road.
by Kant MR, Baldwin IT.
Journal: Curr Opin Genet Dev. :
- Liver proteomics for therapeutic drug discovery: inhibition of the cyclophilin receptor CD147 attenuates sepsis-induced acute renal failure.
by Dear JW, Leelahavanichkul A, Aponte A, Hu X, Constant SL, Hewitt SM, Yuen PS, Star RA.
Journal: Crit Care Med. 35(10):2319-28
- X!!Tandem, an Improved Method for Running X!Tandem in Parallel on Collections of Commodity Computers.
by Bjornson RD, Carriero NJ, Colangelo C, Shifman M, Cheung KH, Miller PL, Williams K.
Journal: J Proteome Res. :
- Proteomics of Caenorhabditis elegans over-expressing human alpha-synuclein analyzed by fluorogenic derivatization-liquid chromatography/tandem mass spectrometry: identification of actin and several ribosomal proteins as negative markers at early Parkinson's disease stages.
by Ichibangase T, Saimaru H, Takamura N, Kuwahara T, Koyama A, Iwatsubo T, Imai K.
Journal: Biomed Chromatogr. :
- Selection of genetically encoded fluorescent single-domain antibodies engineered for efficient expression in Escherichia coli.
by Olichon A, Surrey T.
Journal: J Biol Chem. :
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