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More December, 2004 bioinformatics journal articles.- The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema.
by Deshpande N, Addess KJ, Bluhm WF, Merino-Ott JC, Townsend-Merino W, Zhang Q, Knezevich C, Xie L, Chen L, Feng Z, Green RK, Flippen-Anderson JL, Westbrook J, Berman HM, Bourne PE.
Journal: Nucleic Acids Res. 33 Database Issue:D233-7
- Oracle Database 10g: a platform for BLAST search and Regular Expression pattern matching in life sciences.
by Stephens SM, Chen JY, Davidson MG, Thomas S, Trute BM.
Journal: Nucleic Acids Res. 33 Database Issue:D675-9
- Unexpected connections between Burnside groups and knot theory.
by Dabkowski MK, Przytycki JH.
Journal: Proc Natl Acad Sci U S A. 101(50):17357-60
- The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology.
by Eppig JT, Bult CJ, Kadin JA, Richardson JE, Blake JA.
Journal: Nucleic Acids Res. 33 Database Issue:D471-5
- Toxicogenomics and systems toxicology: aims and prospects.
by Waters MD, Fostel JM.
Journal: Nat Rev Genet. 5(12):936-48
- A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome.
by Accardo MC, Giordano E, Riccardo S, Digilio FA, Iazzetti G, Calogero RA, Furia M.
Journal: Bioinformatics. 20(18):3293-3301
- A graph-theoretic approach to testing associations between disparate sources of functional genomics data.
by Balasubramanian R, Laframboise T, Scholtens D, Gentleman R.
Journal: Bioinformatics. 20(18):3353-62
- EcoCyc: a comprehensive database resource for Escherichia coli.
by Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gil M, Karp PD.
Journal: Nucleic Acids Res. 33 Database Issue:D334-7
- Targeting malaria virulence and remodeling proteins to the host erythrocyte.
by Marti M, Good RT, Rug M, Knuepfer E, Cowman AF.
Journal: Science. 306(5703):1930-3
- NdPASA: A novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
by Wang J, Feng JA.
Journal: Proteins. :
- FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression.
by Paschall JE, Oleksiak MF, Vanwye JD, Roach JL, Whitehead A, Wykoff GJ, Kolell KJ, Crawford DL.
Journal: BMC Genomics. 5(1):96
- A functional hierarchical organization of the protein sequence space.
by Kaplan N, Friedlich M, Fromer M, Linial M.
Journal: BMC Bioinformatics. 5(1):196
- Conserved repeat motifs and glucan binding by glucansucrases of oral streptococci and Leuconostoc mesenteroides.
by Shah DS, Joucla G, Remaud-Simeon M, Russell RR.
Journal: J Bacteriol. 186(24):8301-8
- Genetic Analysis of the HAMP Domain of the Aer Aerotaxis Sensor Localizes Flavin Adenine Dinucleotide-Binding Determinants to the AS-2 Helix.
by Ma Q, Johnson MS, Taylor BL.
Journal: J Bacteriol. 187(1):193-201
- PSORTdb: a protein subcellular localization database for bacteria.
by Rey S, Acab M, Gardy JL, Laird MR, Defays K, Lambert C, Brinkman FS.
Journal: Nucleic Acids Res. 33 Database Issue:D164-8
- Advances to Bayesian network inference for generating causal networks from observational biological data.
by Yu J, Smith VA, Wang PP, Hartemink AJ, Jarvis ED.
Journal: Bioinformatics. 20(18):3594-603
- Recent developments in the monitoring, modeling and control of biological production systems.
by Mandenius CF.
Journal: Bioprocess Biosyst Eng. 26(6):347-51
- Large-scale mutagenesis of the mouse to understand the genetic bases of nervous system structure and function.
by Goldowitz D, Frankel WN, Takahashi JS, Holtz-Vitaterna M, Bult C, Kibbe WA, Snoddy J, Li Y, Pretel S, Yates J, Swanson DJ.
Journal: Brain Res Mol Brain Res. 132(2):105-15
- Conserved network motifs allow protein-protein interaction prediction.
by Albert I, Albert R.
Journal: Bioinformatics. 20(18):3346-52
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