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More December, 2004 bioinformatics journal articles.- Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona.
by Kusakabe T, Yoshida R, Ikeda Y, Tsuda M.
Journal: Dev Biol. 276(2):563-80
- A graph based algorithm for generating EST consensus sequences.
by Malde K, Coward E, Jonassen I.
Journal: Bioinformatics. :
- EAnnot: a genome annotation tool using experimental evidence.
by Ding L, Sabo A, Berkowicz N, Meyer RR, Shotland Y, Johnson MR, Pepin KH, Wilson RK, Spieth J.
Journal: Genome Res. 14(12):2503-9
- The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema.
by Deshpande N, Addess KJ, Bluhm WF, Merino-Ott JC, Townsend-Merino W, Zhang Q, Knezevich C, Xie L, Chen L, Feng Z, Green RK, Flippen-Anderson JL, Westbrook J, Berman HM, Bourne PE.
Journal: Nucleic Acids Res. 33 Database Issue:D233-7
- The European Bioinformatics Institute's data resources: towards systems biology.
by Brooksbank C, Cameron G, Thornton J.
Journal: Nucleic Acids Res. 33 Database Issue:D46-53
- Unexpected connections between Burnside groups and knot theory.
by Dabkowski MK, Przytycki JH.
Journal: Proc Natl Acad Sci U S A. 101(50):17357-60
- SPD--a web-based secreted protein database.
by Chen Y, Zhang Y, Yin Y, Gao G, Li S, Jiang Y, Gu X, Luo J.
Journal: Nucleic Acids Res. 33 Database Issue:D169-73
- Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources.
by Andersen JN, Vecchio RL, Kannan N, Gergel J, Neuwald AF, Tonks NK.
Journal: Methods. 35(1):90-114
- MOLE: a data management application based on a protein production data model.
by Morris C, Wood P, Griffiths SL, Wilson KS, Ashton AW.
Journal: Proteins. 58(2):285-9
- GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.
by Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Déhais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlné G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Rivière S, Rombauts S, Rouzé P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A.
Journal: Nucleic Acids Res. 33 Database Issue:D641-6
- Conserved network motifs allow protein-protein interaction prediction.
by Albert I, Albert R.
Journal: Bioinformatics. 20(18):3346-52
- Biological applications of support vector machines.
by Yang ZR.
Journal: Brief Bioinform. 5(4):328-38
- EcoCyc: a comprehensive database resource for Escherichia coli.
by Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gil M, Karp PD.
Journal: Nucleic Acids Res. 33 Database Issue:D334-7
- Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, D. melanogaster.
by Bergman CM, Carlson JW, Celniker SE.
Journal: Bioinformatics. :
- Conserved repeat motifs and glucan binding by glucansucrases of oral streptococci and Leuconostoc mesenteroides.
by Shah DS, Joucla G, Remaud-Simeon M, Russell RR.
Journal: J Bacteriol. 186(24):8301-8
- Toxicogenomics and systems toxicology: aims and prospects.
by Waters MD, Fostel JM.
Journal: Nat Rev Genet. 5(12):936-48
- A review of bioinformatics degrees in Australia.
by Cattley S.
Journal: Brief Bioinform. 5(4):350-4
- Evolutionary trace residues in noroviruses: importance in receptor binding, antigenicity, virion assembly, and strain diversity.
by Chakravarty S, Hutson AM, Estes MK, Prasad BV.
Journal: J Virol. 79(1):554-68
- Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: Identification by mass spectrometry and bioinformatics.
by Boudart G, Jamet E, Rossignol M, Lafitte C, Borderies G, Jauneau A, Esquerré-Tugayé MT, Pont-Lezica R.
Journal: Proteomics. :
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