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More February, 2005 bioinformatics journal articles.- Using sequence compression to speedup probabilistic profile matching.
by Freschi V, Bogliolo A.
Journal: Bioinformatics. :
- Predicted hexameric structure of the Agrobacterium VirB4 C terminus suggests VirB4 acts as a docking site during type IV secretion.
by Middleton R, Sjölander K, Krishnamurthy N, Foley J, Zambryski P.
Journal: Proc Natl Acad Sci U S A. 102(5):1685-90
- A feedforward loop motif in transcriptional regulation: induction and repression.
by Hayot F, Jayaprakash C.
Journal: J Theor Biol. 234(1):133-43
- Saccharomyces cerevisiae Ybr004c and its human homologue are required for addition of the second mannose during glycosylphosphatidylinositol precursor assembly.
by Fabre AL, Orlean P, Taron CH.
Journal: FEBS J. 272(5):1160-8
- Molecular characterization of proteolytic cleavage sites of the Pseudomonas syringae effector AvrRpt2.
by Chisholm ST, Dahlbeck D, Krishnamurthy N, Day B, Sjolander K, Staskawicz BJ.
Journal: Proc Natl Acad Sci U S A. :
- Ontological visualization of protein-protein interactions.
by Drabkin HJ, Hollenbeck C, Hill DP, Blake JA.
Journal: BMC Bioinformatics. 6(1):29
- Relational patterns of gene expression via nonmetric multidimensional scaling analysis.
by Taguchi YH, Oono Y.
Journal: Bioinformatics. :
- Functional specificity of shuttling hnRNPs revealed by genome-wide analysis of their RNA binding profiles.
by Guisbert KK, Duncan K, Li H, Guthrie C.
Journal: RNA. :
- A structural model of the plant acyl-acyl carrier protein thioesterase FatB comprises two helix/4-stranded sheet domains, the N-terminal domain containing residues that affect specificity and the C-terminal domain containing catalytic residues.
by Mayer KM, Shanklin J.
Journal: J Biol Chem. 280(5):3621-7
- Interaction network containing conserved and essential protein complexes in Escherichia coli.
by Butland G, Peregrín-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A.
Journal: Nature. 433(7025):531-7
- Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.
by Randau L, Münch R, Hohn MJ, Jahn D, Söll D.
Journal: Nature. 433(7025):537-41
- Evolution of transcription factor DNA binding sites.
by Kotelnikova EA, Makeev VJ, Gelfand MS.
Journal: Gene. :
- Atlas - a data warehouse for integrative bioinformatics.
by Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.
Journal: BMC Bioinformatics. 6(1):34
- Annotation of Genes Involved in Glycerolipid Biosynthesis in Chlamydomonas reinhardtii: Discovery of the Betaine Lipid Synthase BTA1Cr.
by Riekhof WR, Sears BB, Benning C.
Journal: Eukaryot Cell. 4(2):242-52
- Ets1 was significantly activated by ERK1/2 in mutant K-ras stably transfected human adrenocortical cells.
by Chen YF, Shin SJ, Lin SR.
Journal: DNA Cell Biol. 24(2):126-32
- Analysis of the Golden Syrian Hamster Anterior Pituitary Gland Proteome by Ion Trap Mass Spectrometry.
by Blake CA, Kakhniashvili DG, Goodman SR.
Journal: Neuroendocrinology. 80(6):355-367
- Prediction of splice sites with dependency graphs and their expanded bayesian networks.
by Chen TM, Lu CC, Li WH.
Journal: Bioinformatics. 21(4):471-82
- Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.
by Kolodny R, Koehl P, Levitt M.
Journal: J Mol Biol. 346(4):1173-88
- Databases, models, and algorithms for functional genomics: a bioinformatics perspective.
by Singh GB, Singh H.
Journal: Mol Biotechnol. 29(2):165-84
- The Flag-2 Locus, an Ancestral Gene Cluster, Is Potentially Associated with a Novel Flagellar System from Escherichia coli.
by Ren CP, Beatson SA, Parkhill J, Pallen MJ.
Journal: J Bacteriol. 187(4):1430-40
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