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More December, 2003 bioinformatics journal articles.- GermOnline, a cross-species community knowledgebase on germ cell differentiation.
by Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, Dumitrescu T, Fellous M, Goldman A, Grootegoed JA, Hawley R, Ishii R, Jégou B, Kaufman RJ, Klein F, Lamb N, Maro B, Nasmyth K, Nicolas A, Orr-Weaver T, Philippsen P, Pineau C, Rabitsch KP, Reinke V, Roest H, Saunders W, Schröder M, Schedl T, Siep M, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Esposito RE Journal: Nucleic Acids Res. 32 Database issue:D560-7
- PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
by Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T. Journal: Nucleic Acids Res. 32 Database issue:D484-8
- ProVal: a protein-scoring function for the selection of native and near-native folds.
by Berglund A, Head RD, Welsh EA, Marshall GR. Journal: Proteins. 54(2):289-302
- 3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
by Fleming K, Müller A, MacCallum RM, Sternberg MJ. Journal: Nucleic Acids Res. 32 Database issue:D245-50
- Molecular classification of cancer types from microarray data using the combination of genetic algorithms and support vector machines.
by Peng S, Xu Q, Ling XB, Peng X, Du W, Chen L. Journal: FEBS Lett. 555(2):358-62
- A BAC-based physical map of the chicken genome.
by Ren C, Lee MK, Yan B, Ding K, Cox B, Romanov MN, Price JA, Dodgson JB, Zhang HB. Journal: Genome Res. 13(12):2754-8
- In silico multicellular systems biology and minimal genomes.
by Werner E. Journal: Drug Discov Today. 8(24):1121-7
- TransportDB: a relational database of cellular membrane transport systems.
by Ren Q, Kang KH, Paulsen IT. Journal: Nucleic Acids Res. 32 Database issue:D284-8
- CryptoDB: the Cryptosporidium genome resource.
by Puiu D, Enomoto S, Buck GA, Abrahamsen MS, Kissinger JC. Journal: Nucleic Acids Res. 32 Database issue:D329-31
- The SUPERFAMILY database in 2004: additions and improvements.
by Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J. Journal: Nucleic Acids Res. 32 Database issue:D235-9
- On the applicability of a haplotype map to un-assayed populations.
by Pe'er I, Beckmann JS. Journal: Hum Genet. 10 2003;114(2):214-7
- coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.
by Chaudhuri RR, Khan AM, Pallen MJ. Journal: Nucleic Acids Res. 32 Database issue:D296-9
- DSDBASE: a consortium of native and modelled disulphide bonds in proteins.
by Vinayagam A, Pugalenthi G, Rajesh R, Sowdhamini R. Journal: Nucleic Acids Res. 32 Database issue:D200-2
- Fugu ESTs: new resources for transcription analysis and genome annotation.
by Clark MS, Edwards YJ, Peterson D, Clifton SW, Thompson AJ, Sasaki M, Suzuki Y, Kikuchi K, Watabe S, Kawakami K, Sugano S, Elgar G, Johnson SL. Journal: Genome Res. 11 2003;13(12):2747-53
- MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics.
by Schoof H, Ernst R, Nazarov V, Pfeifer L, Mewes HW, Mayer KF. Journal: Nucleic Acids Res. 32 Database issue:D373-6
- AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome.
by Steffens NO, Galuschka C, Schindler M, Bülow L, Hehl R. Journal: Nucleic Acids Res. 32 Database issue:D368-72
- SMART 4.0: towards genomic data integration.
by Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P. Journal: Nucleic Acids Res. 32 Database issue:D142-4
- Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
by Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM. Journal: Nucleic Acids Res. 32 Database issue:D311-4
- The ORFanage: an ORFan database.
by Siew N, Azaria Y, Fischer D. Journal: Nucleic Acids Res. 32 Database issue:D281-3
- The KEGG resource for deciphering the genome.
by Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. Journal: Nucleic Acids Res. 32 Database issue:D277-80
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