More December, 2003 bioinformatics journal articles.- TRF3, a TATA-box-binding protein-related factor, is vertebrate-specific and widely expressed.
by Persengiev SP, Zhu X, Dixit BL, Maston GA, Kittler EL, Green MR.
Journal: Proc Natl Acad Sci U S A. 11 2003;100(25):14887-91
- The microRNA Registry.
by Griffiths-Jones S.
Journal: Nucleic Acids Res. 32 Database issue:D109-11
- The Rice PIPELINE: a unification tool for plant functional genomics.
by Yazaki J, Kojima K, Suzuki K, Kishimoto N, Kikuchi S.
Journal: Nucleic Acids Res. 32 Database issue:D383-7
- The SUPERFAMILY database in 2004: additions and improvements.
by Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J.
Journal: Nucleic Acids Res. 32 Database issue:D235-9
- 3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
by Fleming K, Müller A, MacCallum RM, Sternberg MJ.
Journal: Nucleic Acids Res. 32 Database issue:D245-50
- Informatics and the immune system: the expanding IL-1 and B7 protein families.
by Grant EP, Coyle AJ, Gutierrez-Ramos JC.
Journal: Semin Immunol. 15(4):225-31
- SURFACE: a database of protein surface regions for functional annotation.
by Ferrè F, Ausiello G, Zanzoni A, Helmer-Citterich M.
Journal: Nucleic Acids Res. 32 Database issue:D240-4
- Systems biology markup language: Level 2 and beyond.
by Finney A, Hucka M.
Journal: Biochem Soc Trans. 31(Pt 6):1472-3
- Controlled vocabularies for consumer health.
by Zielstorff RD.
Journal: J Biomed Inform. 2003 Aug-Oct;36(4-5):326-33
- Human protein reference database as a discovery resource for proteomics.
by Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A.
Journal: Nucleic Acids Res. 32 Database issue:D497-501
- Genomic analysis in the sting-2 quantitative trait locus for defensive behavior in the honey bee, Apis mellifera.
by Lobo NF, Ton LQ, Hill CA, Emore C, Romero-Severson J, Hunt GJ, Collins FH.
Journal: Genome Res. 13(12):2588-93
- topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association.
by Stitziel NO, Binkowski TA, Tseng YY, Kasif S, Liang J.
Journal: Nucleic Acids Res. 32 Database issue:D520-2
- Systems biology. Tracing life's circuitry.
by Pennisi E.
Journal: Science. 302(5651):1646-9
- Enrichment of gene-coding sequences in maize by genome filtration.
by Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.
Journal: Science. 302(5653):2118-20
- The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.
by Schmid CD, Praz V, Delorenzi M, Périer R, Bucher P.
Journal: Nucleic Acids Res. 32 Database issue:D82-5
- GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences.
by Petrey D, Honig B.
Journal: Methods Enzymol. 374:492-509
- DSDBASE: a consortium of native and modelled disulphide bonds in proteins.
by Vinayagam A, Pugalenthi G, Rajesh R, Sowdhamini R.
Journal: Nucleic Acids Res. 32 Database issue:D200-2
- Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species.
by Watanabe J, Suzuki Y, Sasaki M, Sugano S.
Journal: Nucleic Acids Res. 32 Database issue:D334-8
- Toward a functional annotation of the human genome using artificial transcription factors.
by Lee DK, Park JW, Kim YJ, Kim J, Lee Y, Kim J, Kim JS.
Journal: Genome Res. 13(12):2708-16
- TOPS: an enhanced database of protein structural topology.
by Michalopoulos I, Torrance GM, Gilbert DR, Westhead DR.
Journal: Nucleic Acids Res. 32 Database issue:D251-4
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