More December, 2003 bioinformatics journal articles.- Database resources of the National Center for Biotechnology Information: update.
by Wheeler DL, Church DM, Edgar R, Federhen S, Helmberg W, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Suzek TO, Tatusova TA, Wagner L.
Journal: Nucleic Acids Res. 32 Database issue:D35-40
- Fugu ESTs: new resources for transcription analysis and genome annotation.
by Clark MS, Edwards YJ, Peterson D, Clifton SW, Thompson AJ, Sasaki M, Suzuki Y, Kikuchi K, Watabe S, Kawakami K, Sugano S, Elgar G, Johnson SL.
Journal: Genome Res. 11 2003;13(12):2747-53
- GenePaint.org: an atlas of gene expression patterns in the mouse embryo.
by Visel A, Thaller C, Eichele G.
Journal: Nucleic Acids Res. 32 Database issue:D552-6
- Nucleotide frequency variation across human genes.
by Louie E, Ott J, Majewski J.
Journal: Genome Res. 11 2003;13(12):2594-601
- Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins.
by Tropsha A, Carter CW, Cammer S, Vaisman II.
Journal: Methods Enzymol. 374:509-44
- RTCGD: retroviral tagged cancer gene database.
by Akagi K, Suzuki T, Stephens RM, Jenkins NA, Copeland NG.
Journal: Nucleic Acids Res. 32 Database issue:D523-7
- Recent improvements to the PROSITE database.
by Hulo N, Sigrist CJ, Le Saux V, Langendijk-Genevaux PS, Bordoli L, Gattiker A, De Castro E, Bucher P, Bairoch A.
Journal: Nucleic Acids Res. 32 Database issue:D134-7
- Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique.
by Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F.
Journal: J Biotechnol. 106(2-3):121-33
- Evolution. Genome comparisons hold clues to human evolution.
by Pennisi E.
Journal: Science. 302(5652):1876-7
- IntAct: an open source molecular interaction database.
by Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, Apweiler R.
Journal: Nucleic Acids Res. 32 Database issue:D452-5
- An efficient algorithm for mining closed itemsets.
by Liu JQ, Pan YH.
Journal: J Zhejiang Univ Sci. 5(1):8-15
- FEMME database: topologic and geometric information of macromolecules.
by Jiménez-Lozano N, Chagoyen M, Cuenca-Alba J, Carazo JM.
Journal: J Struct Biol. 2003 Oct-Nov;144(1-2):104-13
- WILMA-automated annotation of protein sequences.
by Prlic A, Domingues FS, Lackner P, Sippl MJ.
Journal: Bioinformatics. 20(1):127-8
- Complete sequencing and characterization of 21,243 full-length human cDNAs.
by Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya
Journal: Nat Genet. 12 2003;36(1):40-5
- Ensembl 2004.
by Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.
Journal: Nucleic Acids Res. 32 Database issue:D468-70
- Efficiency improvement of peptide identification for an organism without complete genome sequence, using expressed sequence tag database and tandem mass spectral data.
by Kwon KH, Kim M, Kim JY, Kim KW, Kim SI, Park YM, Yoo JS.
Journal: Proteomics. 3(12):2305-9
- Systems biology markup language: Level 2 and beyond.
by Finney A, Hucka M.
Journal: Biochem Soc Trans. 31(Pt 6):1472-3
- Bayesian networks for knowledge discovery in large datasets: basics for nurse researchers.
by Lee SM, Abbott PA.
Journal: J Biomed Inform. 2003 Aug-Oct;36(4-5):389-99
- MolliGen, a database dedicated to the comparative genomics of Mollicutes.
by Barré A, de Daruvar A, Blanchard A.
Journal: Nucleic Acids Res. 32 Database issue:D307-10
- Effective scoring function for protein sequence design.
by Liang S, Grishin NV.
Journal: Proteins. 54(2):271-81
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