More December, 2003 bioinformatics journal articles.- Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane.
by Vettore AL, da Silva FR, Kemper EL, Souza GM, da Silva AM, Ferro MI, Henrique-Silva F, Giglioti EA, Lemos MV, Coutinho LL, Nobrega MP, Carrer H, França SC, Bacci Júnior M, Goldman MH, Gomes SL, Nunes LR, Camargo LE, Siqueira WJ, Van Sluys MA, Thiemann OH, Kuramae EE, Santelli RV, Marino CL, Targon ML, Ferro JA, Silveira HC, Marini DC, Lemos EG, Monteiro-Vitorello CB, Tambor JH, Carraro DM, Roberto PG, Martins VG, Goldman GH, de Oliveira RC, Truffi D, Colombo CA, Rossi M, de Araujo PG, Sculaccio
Journal: Genome Res. 11 2003;13(12):2725-35
- PHYTOPROT: a database of clusters of plant proteins.
by Mohseni-Zadeh S, Louis A, Brézellec P, Risler JL.
Journal: Nucleic Acids Res. 32 Database issue:D351-3
- From gene networks to gene function.
by Schlitt T, Palin K, Rung J, Dietmann S, Lappe M, Ukkonen E, Brazma A.
Journal: Genome Res. 13(12):2568-76
- MolliGen, a database dedicated to the comparative genomics of Mollicutes.
by Barré A, de Daruvar A, Blanchard A.
Journal: Nucleic Acids Res. 32 Database issue:D307-10
- Development of a porcine brain cDNA library, EST database, and microarray resource.
by Nobis W, Ren X, Suchyta SP, Suchyta TR, Zanella AJ, Coussens PM.
Journal: Physiol Genomics. 12 2003;16(1):153-9
- EyeSite: a semi-automated database of protein families in the eye.
by Lee DA, Fefeu S, Edo-Ukeh AA, Orengo CA, Slingsby C.
Journal: Nucleic Acids Res. 32 Database issue:D148-52
- Bayesian networks for knowledge discovery in large datasets: basics for nurse researchers.
by Lee SM, Abbott PA.
Journal: J Biomed Inform. 2003 Aug-Oct;36(4-5):389-99
- UniProt: the Universal Protein knowledgebase.
by Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.
Journal: Nucleic Acids Res. 32 Database issue:D115-9
- Topological analysis of metabolic networks based on Petri net theory.
by Zevedei-Oancea I, Schuster S.
Journal: In Silico Biol. 3(3):323-45
- Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
by Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, Todd MA, Tanenbaum DM, Civello D, Lu F, Murphy B, Ferriera S, Wang G, Zheng X, White TJ, Sninsky JJ, Adams MD, Cargill M.
Journal: Science. 302(5652):1960-3
- Automatic prediction of protein function.
by Rost B, Liu J, Nair R, Wrzeszczynski KO, Ofran Y.
Journal: Cell Mol Life Sci. 60(12):2637-50
- ANTIMIC: a database of antimicrobial sequences.
by Brahmachary M, Krishnan SP, Koh JL, Khan AM, Seah SH, Tan TW, Brusic V, Bajic VB.
Journal: Nucleic Acids Res. 32 Database issue:D586-9
- Whole-genome analysis of two-component signal transduction genes in fungal pathogens.
by Catlett NL, Yoder OC, Turgeon BG.
Journal: Eukaryot Cell. 2(6):1151-61
- The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
by Gueneau de Novoa P, Williams KP.
Journal: Nucleic Acids Res. 32 Database issue:D104-8
- The KNOTTIN website and database: a new information system dedicated to the knottin scaffold.
by Gelly JC, Gracy J, Kaas Q, Le-Nguyen D, Heitz A, Chiche L.
Journal: Nucleic Acids Res. 32 Database issue:D156-9
- THGS: a web-based database of Transmembrane Helices in Genome Sequences.
by Fernando SA, Selvarani P, Das S, Kumar ChK, Mondal S, Ramakumar S, Sekar K.
Journal: Nucleic Acids Res. 32 Database issue:D125-8
- Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences.
by Jensen MA, Li FS, van 't Wout AB, Nickle DC, Shriner D, He HX, McLaughlin S, Shankarappa R, Margolick JB, Mullins JI.
Journal: J Virol. 77(24):13376-88
- The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
by Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.
Journal: Nucleic Acids Res. 32 Database issue:D262-6
- Fugu ESTs: new resources for transcription analysis and genome annotation.
by Clark MS, Edwards YJ, Peterson D, Clifton SW, Thompson AJ, Sasaki M, Suzuki Y, Kikuchi K, Watabe S, Kawakami K, Sugano S, Elgar G, Johnson SL.
Journal: Genome Res. 11 2003;13(12):2747-53
- Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis.
by Cánovas D, Cases I, de Lorenzo V.
Journal: Environ Microbiol. 5(12):1242-56
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