More December, 2003 bioinformatics journal articles.- The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.
by Porter CT, Bartlett GJ, Thornton JM.
Journal: Nucleic Acids Res. 32 Database issue:D129-33
- Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions.
by Gunasekaran K, Hagler AT, Gierasch LM.
Journal: Proteins. 54(2):179-94
- AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus.
by Srinivasan J, Otto GW, Kahlow U, Geisler R, Sommer RJ.
Journal: Nucleic Acids Res. 32 Database issue:D421-2
- Mosaic evolution of the severe acute respiratory syndrome coronavirus.
by Stavrinides J, Guttman DS.
Journal: J Virol. 78(1):76-82
- The Pfam protein families database.
by Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR.
Journal: Nucleic Acids Res. 32 Database issue:D138-41
- A novel database of disulfide patterns and its application to the discovery of distantly related homologs.
by van Vlijmen HW, Gupta A, Narasimhan LS, Singh J.
Journal: J Mol Biol. 335(4):1083-92
- Development of a porcine brain cDNA library, EST database, and microarray resource.
by Nobis W, Ren X, Suchyta SP, Suchyta TR, Zanella AJ, Coussens PM.
Journal: Physiol Genomics. 12 2003;16(1):153-9
- FLAGdb++: a database for the functional analysis of the Arabidopsis genome.
by Samson F, Brunaud V, Duchêne S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S.
Journal: Nucleic Acids Res. 32 Database issue:D347-50
- Maize genome sequencing by methylation filtration.
by Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR.
Journal: Science. 302(5653):2115-7
- The aMAZE LightBench: a web interface to a relational database of cellular processes.
by Lemer C, Antezana E, Couche F, Fays F, Santolaria X, Janky R, Deville Y, Richelle J, Wodak SJ.
Journal: Nucleic Acids Res. 32 Database issue:D443-8
- EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information.
by Henrick K, Newman R, Tagari M, Chagoyen M.
Journal: J Struct Biol. 2003 Oct-Nov;144(1-2):228-37
- Topological and electron-transfer properties of yeast cytochrome c adsorbed on bare gold electrodes.
by Bonanni B, Alliata D, Bizzarri AR, Cannistraro S.
Journal: Chemphyschem. 4(11):1183-8
- Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era.
by Kell DB, Oliver SG.
Journal: Bioessays. 26(1):99-105
- Efficiency improvement of peptide identification for an organism without complete genome sequence, using expressed sequence tag database and tandem mass spectral data.
by Kwon KH, Kim M, Kim JY, Kim KW, Kim SI, Park YM, Yoo JS.
Journal: Proteomics. 3(12):2305-9
- A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
by Capriotti E, Fariselli P, Rossi I, Casadio R.
Journal: Proteins. 54(2):351-60
- Applications of microarray and bioinformatics tools to dissect molecular responses of the central nervous system to antioxidant micronutrients.
by Gohil K, Chakraborty AA.
Journal: Nutrition. 20(1):50-5
- AANT: the Amino Acid-Nucleotide Interaction Database.
by Hoffman MM, Khrapov MA, Cox JC, Yao J, Tong L, Ellington AD.
Journal: Nucleic Acids Res. 32 Database issue:D174-81
- Ensembl 2004.
by Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.
Journal: Nucleic Acids Res. 32 Database issue:D468-70
- Enrichment of gene-coding sequences in maize by genome filtration.
by Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.
Journal: Science. 302(5653):2118-20
- DEG: a database of essential genes.
by Zhang R, Ou HY, Zhang CT.
Journal: Nucleic Acids Res. 32 Database issue:D271-2
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