More December, 2003 bioinformatics journal articles.- UniProt: the Universal Protein knowledgebase.
by Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.
Journal: Nucleic Acids Res. 32 Database issue:D115-9
- PRIMEX: rapid identification of oligonucleotide matches in whole genomes.
by Lexa M, Valle G.
Journal: Bioinformatics. 19(18):2486-8
- Prediction of mammalian microRNA targets.
by Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB.
Journal: Cell. 115(7):787-98
- ANTIMIC: a database of antimicrobial sequences.
by Brahmachary M, Krishnan SP, Koh JL, Khan AM, Seah SH, Tan TW, Brusic V, Bajic VB.
Journal: Nucleic Acids Res. 32 Database issue:D586-9
- Anti-osteoactivin antibody inhibits osteoblast differentiation and function in vitro.
by Selim AA, Abdelmagid SM, Kanaan RA, Smock SL, Owen TA, Popoff SN, Safadi FF.
Journal: Crit Rev Eukaryot Gene Expr. 13(2-4):265-75
- Informatics and the immune system: the expanding IL-1 and B7 protein families.
by Grant EP, Coyle AJ, Gutierrez-Ramos JC.
Journal: Semin Immunol. 15(4):225-31
- Typing single-nucleotide polymorphisms using a gel-based sequencer: a new data analysis tool and suggestions for improved efficiency.
by Jungerius BJ, Veenendaal A, Van Oost BA, Te Pas MF, Groenen MA.
Journal: Mol Biotechnol. 25(3):283-8
- CryptoDB: the Cryptosporidium genome resource.
by Puiu D, Enomoto S, Buck GA, Abrahamsen MS, Kissinger JC.
Journal: Nucleic Acids Res. 32 Database issue:D329-31
- Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane.
by Vettore AL, da Silva FR, Kemper EL, Souza GM, da Silva AM, Ferro MI, Henrique-Silva F, Giglioti EA, Lemos MV, Coutinho LL, Nobrega MP, Carrer H, França SC, Bacci Júnior M, Goldman MH, Gomes SL, Nunes LR, Camargo LE, Siqueira WJ, Van Sluys MA, Thiemann OH, Kuramae EE, Santelli RV, Marino CL, Targon ML, Ferro JA, Silveira HC, Marini DC, Lemos EG, Monteiro-Vitorello CB, Tambor JH, Carraro DM, Roberto PG, Martins VG, Goldman GH, de Oliveira RC, Truffi D, Colombo CA, Rossi M, de Araujo PG, Sculaccio
Journal: Genome Res. 11 2003;13(12):2725-35
- The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.
by Schmid CD, Praz V, Delorenzi M, Périer R, Bucher P.
Journal: Nucleic Acids Res. 32 Database issue:D82-5
- HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
by Pohar TT, Sun H, Davuluri RV.
Journal: Nucleic Acids Res. 32 Database issue:D86-90
- The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
by Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.
Journal: Nucleic Acids Res. 32 Database issue:D262-6
- From gene networks to gene function.
by Schlitt T, Palin K, Rung J, Dietmann S, Lappe M, Ukkonen E, Brazma A.
Journal: Genome Res. 13(12):2568-76
- SEMEDA: ontology based semantic integration of biological databases.
by Köhler J, Philippi S, Lange M.
Journal: Bioinformatics. 19(18):2420-7
- ACLAME: a CLAssification of Mobile genetic Elements.
by Leplae R, Hebrant A, Wodak SJ, Toussaint A.
Journal: Nucleic Acids Res. 32 Database issue:D45-9
- The Rice PIPELINE: a unification tool for plant functional genomics.
by Yazaki J, Kojima K, Suzuki K, Kishimoto N, Kikuchi S.
Journal: Nucleic Acids Res. 32 Database issue:D383-7
- Finding unexpected patterns in microarray data.
by Perelman S, Mazzella MA, Muschietti J, Zhu T, Casal JJ.
Journal: Plant Physiol. 133(4):1717-25
- MIPS: analysis and annotation of proteins from whole genomes.
by Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, Münsterkötter M, Pagel P, Strack N, Stümpflen V, Warfsmann J, Ruepp A.
Journal: Nucleic Acids Res. 32 Database issue:D41-4
- AluGene: a database of Alu elements incorporated within protein-coding genes.
by Dagan T, Sorek R, Sharon E, Ast G, Graur D.
Journal: Nucleic Acids Res. 32 Database issue:D489-92
- JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
by Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B.
Journal: Nucleic Acids Res. 32 Database issue:D91-4
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