More December, 2003 bioinformatics journal articles.- The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.
by Schmid CD, Praz V, Delorenzi M, Périer R, Bucher P. Journal: Nucleic Acids Res. 32 Database issue:D82-5
- Xpro: database of eukaryotic protein-encoding genes.
by Gopalan V, Tan TW, Lee BT, Ranganathan S. Journal: Nucleic Acids Res. 32 Database issue:D59-63
- The next step in systems biology: simulating the temporospatial dynamics of molecular network.
by Zhu H, Huang S, Dhar P. Journal: Bioessays. 26(1):68-72
- Systems biology markup language: Level 2 and beyond.
by Finney A, Hucka M. Journal: Biochem Soc Trans. 31(Pt 6):1472-3
- The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
by Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R. Journal: Nucleic Acids Res. 32 Database issue:D262-6
- PIRSF: family classification system at the Protein Information Resource.
by Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, Ledley RS, Suzek BE, Arminski L, Chen Y, Zhang J, Cardenas JL, Chung S, Castro-Alvear J, Dinkov G, Barker WC. Journal: Nucleic Acids Res. 32 Database issue:D112-4
- HERVd: the Human Endogenous RetroViruses Database: update.
by Paces J, Pavlícek A, Zika R, Kapitonov VV, Jurka J, Paces V. Journal: Nucleic Acids Res. 32 Database issue:D50
- Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.
by Zhang Z, Harrison PM, Liu Y, Gerstein M. Journal: Genome Res. 13(12):2541-58
- Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine.
by Watkinson JI, Sioson AA, Vasquez-Robinet C, Shukla M, Kumar D, Ellis M, Heath LS, Ramakrishnan N, Chevone B, Watson LT, van Zyl L, Egertsdotter U, Sederoff RR, Grene R. Journal: Plant Physiol. 133(4):1702-16
- Topological and electron-transfer properties of yeast cytochrome c adsorbed on bare gold electrodes.
by Bonanni B, Alliata D, Bizzarri AR, Cannistraro S. Journal: Chemphyschem. 4(11):1183-8
- SOLVE and RESOLVE: automated structure solution and density modification.
by Terwilliger TC. Journal: Methods Enzymol. 374:22-37
- Integrating functional genomics data.
by Kemmeren P, Holstege FC. Journal: Biochem Soc Trans. 31(Pt 6):1484-7
- Phenotypic plasticity can potentiate rapid evolutionary change.
by Behera N, Nanjundiah V. Journal: J Theor Biol. 226(2):177-84
- BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.
by Zhao W, Wang J, He X, Huang X, Jiao Y, Dai M, Wei S, Fu J, Chen Y, Ren X, Zhang Y, Ni P, Zhang J, Li S, Wang J, Wong GK, Zhao H, Yu J, Yang H, Wang J. Journal: Nucleic Acids Res. 32 Database issue:D377-82
- A protein interaction map of Drosophila melanogaster.
by Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP Journal: Science. 11 2003;302(5651):1727-36
- SGMD: the Soybean Genomics and Microarray Database.
by Alkharouf NW, Matthews BF. Journal: Nucleic Acids Res. 32 Database issue:D398-400
- Development of a porcine brain cDNA library, EST database, and microarray resource.
by Nobis W, Ren X, Suchyta SP, Suchyta TR, Zanella AJ, Coussens PM. Journal: Physiol Genomics. 12 2003;16(1):153-9
- The KNOTTIN website and database: a new information system dedicated to the knottin scaffold.
by Gelly JC, Gracy J, Kaas Q, Le-Nguyen D, Heitz A, Chiche L. Journal: Nucleic Acids Res. 32 Database issue:D156-9
- A statistical sampling algorithm for RNA secondary structure prediction.
by Ding Y, Lawrence CE. Journal: Nucleic Acids Res. 31(24):7280-301
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