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More December, 2003 bioinformatics journal articles.- Gene length and proximity to neighbors affect genome-wide expression levels.
by Chiaromonte F, Miller W, Bouhassira EE.
Journal: Genome Res. 11 2003;13(12):2602-8
- Use of proteomic analysis to monitor responses to biological therapies.
by Espina V, Dettloff KA, Cowherd S, Petricoin EF, Liotta LA.
Journal: Expert Opin Biol Ther. 4(1):83-93
- Enrichment of gene-coding sequences in maize by genome filtration.
by Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.
Journal: Science. 302(5653):2118-20
- TRF3, a TATA-box-binding protein-related factor, is vertebrate-specific and widely expressed.
by Persengiev SP, Zhu X, Dixit BL, Maston GA, Kittler EL, Green MR.
Journal: Proc Natl Acad Sci U S A. 11 2003;100(25):14887-91
- A new horizon of proteomics in Korea.
by Paik YK.
Journal: Proteomics. 3(12):NA
- SCOP database in 2004: refinements integrate structure and sequence family data.
by Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.
Journal: Nucleic Acids Res. 32 Database issue:D226-9
- Toxicogenomics in drug development.
by Guerreiro N, Staedtler F, Grenet O, Kehren J, Chibout SD.
Journal: Toxicol Pathol. 2003 Sep-Oct;31(5):471-9
- HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.
by Stebbings LA, Mizuguchi K.
Journal: Nucleic Acids Res. 32 Database issue:D203-7
- Typing single-nucleotide polymorphisms using a gel-based sequencer: a new data analysis tool and suggestions for improved efficiency.
by Jungerius BJ, Veenendaal A, Van Oost BA, Te Pas MF, Groenen MA.
Journal: Mol Biotechnol. 25(3):283-8
- Finding unexpected patterns in microarray data.
by Perelman S, Mazzella MA, Muschietti J, Zhu T, Casal JJ.
Journal: Plant Physiol. 133(4):1717-25
- IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data.
by Kaas Q, Ruiz M, Lefranc MP.
Journal: Nucleic Acids Res. 32 Database issue:D208-10
- Evaluation of common gene expression patterns in the rat nervous system.
by Kaiser S, Nisenbaum LK.
Journal: Physiol Genomics. 12 2003;16(1):1-7
- Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps.
by Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D.
Journal: Nucleic Acids Res. 31(24):7099-109
- Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
by Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F.
Journal: J Biotechnol. 106(2-3):157-67
- The aMAZE LightBench: a web interface to a relational database of cellular processes.
by Lemer C, Antezana E, Couche F, Fays F, Santolaria X, Janky R, Deville Y, Richelle J, Wodak SJ.
Journal: Nucleic Acids Res. 32 Database issue:D443-8
- The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli.
by Sundararaj S, Guo A, Habibi-Nazhad B, Rouani M, Stothard P, Ellison M, Wishart DS.
Journal: Nucleic Acids Res. 32 Database issue:D293-5
- ACLAME: a CLAssification of Mobile genetic Elements.
by Leplae R, Hebrant A, Wodak SJ, Toussaint A.
Journal: Nucleic Acids Res. 32 Database issue:D45-9
- SMART 4.0: towards genomic data integration.
by Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P.
Journal: Nucleic Acids Res. 32 Database issue:D142-4
- JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
by Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B.
Journal: Nucleic Acids Res. 32 Database issue:D91-4
- Genew: the Human Gene Nomenclature Database, 2004 updates.
by Wain HM, Lush MJ, Ducluzeau F, Khodiyar VK, Povey S.
Journal: Nucleic Acids Res. 32 Database issue:D255-7
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