A novel biological function for CD44 in axon growth of retinal ganglion cells identified by a bioinformatics approach.
by Ries A, Goldberg JL, Grimpe B.
Affliation: Department of Cell Biology, Max Planck Institute of Biochemistry, Munich, Germany.
Journal: J Neurochem. :
Publication Date: Friday, August 31, 2007
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Exploring the midgut transcriptome of Phlebotomus papatasi: comparative analysis of expression profiles of sugar-fed, blood-fed and Leishmania major-infected sandflies.
by Ramalho-Ortigao M, Jochim RC, Anderson JM, Lawyer PG, Pham VM, Kamhawi S, Valenzuela JG.
Affliation:
Journal: BMC Genomics. 8(1):300
Publication Date: Friday, August 31, 2007
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Modeling gene expression regulatory networks with the sparse vector autoregressive model.
by Fujita A, Sato JR, Garay-Malpartida HM, Yamaguchi R, Miyano S, Sogayar MC, Ferreira CE.
Affliation:
Journal: BMC Syst Biol. 1(1):39
Publication Date: Friday, August 31, 2007
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Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.
by Porollo A, Meller J.
Affliation:
Journal: BMC Bioinformatics. 8(1):316
Publication Date: Thursday, August 30, 2007
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Collaborations Tailored for Bioinformatics Projects.
by Zhong Y, Zhang L, Su D.
Affliation:
Journal: Science. 290(5499):2074a
Publication Date: Thursday, August 30, 2007
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Selected papers from the 5th Computational Systems Bioinformatics Conference, August 2006, Stanford, California, USA.
by
Affliation:
Journal: J Bioinform Comput Biol. 5(2a):181-427
Publication Date: Thursday, August 30, 2007
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NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence.
by Nielsen M, Lundegaard C, Blicher T, Lamberth K, Harndahl M, Justesen S, Røder G, Peters B, Sette A, Lund O, Buus S.
Affliation: Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Lyngby, Denmark. mniel@cbs.dtu.dk
Journal: PLoS ONE. 2(8):e796
Publication Date: Wednesday, August 29, 2007
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Automated Discovery of Functional Generality of Human Gene Expression Programs.
by Gerber GK, Dowell RD, Jaakkola TS, Gifford DK.
Affliation:
Journal: PLoS Comput Biol. 3(8):e148
Publication Date: Thursday, August 16, 2007
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Research and education for biomedical informatics at Tokyo medical and dental university.
by Tanaka H, Nakaya J.
Affliation: Tokyo Medical and Dental University, Information Center for Medical Sciences, 1-5-45 Yushima, Bunkyo-ku, Tokyo, 113-5810 Japan. E-mail: tanaka@cim.tmd.ac.jp.
Journal: Methods Inf Med. 46 Suppl 1:157-62
Publication Date: Thursday, August 16, 2007
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O2 migration pathways are not conserved across proteins of a similar fold.
by Cohen J, Schulten K.
Affliation: Beckman Institute, University of Illinois.
Journal: Biophys J. :
Publication Date: Monday, August 13, 2007
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Parallel stochastic simulation of macroscopic calcium currents.
by González-Vélez V, González-Vélez H.
Affliation: Area de Química Aplicada, Universidad Autónoma Metropolitana-Azcapotzalco, 02200 México D.F., México. vgv@correo.azc.uam.mx.
Journal: J Bioinform Comput Biol. 5(3):755-72
Publication Date: Friday, August 10, 2007
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MOVE: a multi-level ontology-based visualization and exploration framework for genomic networks.
by Bosman DW, Blom EJ, Ogao PJ, Kuipers OP, Roerdink JB.
Affliation: Institute for Mathematics and Computing Science, University of Groningen, Netherlands.
Journal: In Silico Biol. 7(1):35-59
Publication Date: Friday, August 10, 2007
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Incorporating homologues into sequence embeddings for protein analysis.
by Eskin E, Snir S.
Affliation: Department of Computer Science, Department of Human Genetics, University of California, Los Angeles, Los Angeles, CA, 90095, USA. eeskin@cs.ucla.edu.
Journal: J Bioinform Comput Biol. 5(3):717-38
Publication Date: Friday, August 10, 2007
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In silico analysis of p53 using the p53 knowledgebase: mutations, polymorphisms, microRNAs and pathways.
by Yang Y, Tantoso E, Chua GH, Yeo ZX, Ng FS, Wong ST, Chung CW, Li KB.
Affliation: Institute of Molecular and Cell Biology, Proteos, Singapore.
Journal: In Silico Biol. 7(1):61-75
Publication Date: Friday, August 10, 2007
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In silico detection of binding mode of J-superfamily conotoxin pl14a with Kv1.6 channel.
by Mondal S, Babu RM, Bhavna R, Ramakumar S.
Affliation: Department of Physics, Indian Institute of Science, India. Email: ramak@physics.iisc.ernet.in.
Journal: In Silico Biol. 7:0018
Publication Date: Friday, August 10, 2007
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nWayComp: A genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms.
by Yao J, Lin H, Doddapaneni H, Civerolo EL.
Affliation: USDA-ARS, Parlier, USA. Email: eciverolo@fresno.ars.usda.gov.
Journal: In Silico Biol. 7:0020
Publication Date: Friday, August 10, 2007
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Prediction of neurotoxins based on their function and source.
by Saha S, Raghava GP.
Affliation: Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India. Email: raghava@imtech.res.in.
Journal: In Silico Biol. 7:0025
Publication Date: Friday, August 10, 2007
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Protein bioinformatics and mixtures of bivariate von mises distributions for angular data.
by Mardia KV, Taylor CC, Subramaniam GK.
Affliation: School of Mathematics, University of Leeds, Leeds, LS2 9JT, U.K.
Journal: Biometrics. 63(2):505-12
Publication Date: Friday, August 10, 2007
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Balanced ROC analysis (BAROC) protocol for the evaluation of protein similarities.
by Busa-Fekete R, Kertész-Farkas A, Kocsor A, Pongor S.
Affliation: Research Group on Artificial Intelligence of the Hungarian Academy of Sciences and University of Szeged, Aradi vértanúk tere 1., H-6720 Szeged, Hungary.
Journal: J Biochem Biophys Methods. :
Publication Date: Friday, August 10, 2007
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Cloning of Rabbit HPRT Gene Using the Recombineering System.
by Shi J, Cai D, Chen X, Sheng H.
Affliation: Program for Graduation Studies, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China. hzsheng2003@yahoo.com.
Journal: Acta Biochim Biophys Sin (Shanghai). 39(8):591-8
Publication Date: Thursday, August 09, 2007
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