Improving the performance of an SVM-based method for predicting protein-protein interactions.
by Dohkan S, Koike A, Takagi T.
Affliation: Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, (CB01) 5-1-5 Kashiwanoha, Kashiwa-shi, Chiba 277-8581, Japan. dohkan@cb.k.u-tokyo.ac.jp
Journal: In Silico Biol. 6(6):515-29
Publication Date: Wednesday, May 23, 2007
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HYBRIDdb: a database of hybrid genes in the human genome.
by Kim DS, Huh JW, Kim HS.
Affliation:
Journal: BMC Genomics. 8(1):128
Publication Date: Wednesday, May 23, 2007
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Assortative mixing in Protein Contact Networks and protein folding kinetics.
by Bagler G, Sinha S.
Affliation: Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500007, India.
Journal: Bioinformatics. :
Publication Date: Wednesday, May 23, 2007
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Discovering gene expression patterns in Time Course Microarray Experiments by ANOVA-SCA.
by Nueda MJ, Conesa A, Westerhuis JA, Hoefsloot HC, Smilde AK, Talón M, Ferrer A.
Affliation: Departamento de Estadística e Investigación Operativa, Universidad de Alicante, Apartado 03080, Alicante, Spain.
Journal: Bioinformatics. :
Publication Date: Wednesday, May 23, 2007
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Predicted binding affinity of candidate HDV epitope: a bioinformatics study.
by Wiwanitkit V.
Affliation: Department of Laboratory Medicine, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Journal: Ann Hepatol. 2007 Apr-Jun;6(2):108-10
Publication Date: Wednesday, May 23, 2007
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A structural basis for interferon-{alpha}-receptor interactions.
by Kumaran J, Wei L, Kotra LP, Fish EN.
Affliation: *Division of Cell and Molecular Biology, Toronto General Research Institute, University Health Network, Toronto, and Departments ofImmunology,Chemistry andPharmaceutical Sciences, University of Toronto, Toronto, Ontario, Canada.
Journal: FASEB J. :
Publication Date: Tuesday, May 22, 2007
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Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability.
by Sharma D, Perisic O, Peng Q, Cao Y, Lam C, Lu H, Li H.
Affliation: Department of Chemistry, University of British Columbia, Vancouver, BC, Canada V6T 1Z1.
Journal: Proc Natl Acad Sci U S A. :
Publication Date: Tuesday, May 22, 2007
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Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways.
by Oh M, Yamada T, Hattori M, Goto S, Kanehisa M.
Affliation: Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.
Journal: J Chem Inf Model. :
Publication Date: Tuesday, May 22, 2007
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Generation of cytotoxic T lymphocytes specific for B-cell acute lymphoblastic leukemia family-shared peptides derived from immunoglobulin heavy chain framework region.
by Liu Y, Zhu P, Hu YM.
Affliation: Department of Pediatrics, General Hospital of People's Liberation Army, Beijing 100853, China (Email: ly_lwd@sohu.com).
Journal: Chin Med J (Engl). 120(8):652-7
Publication Date: Tuesday, May 22, 2007
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caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability.
by Komatsoulis GA, Warzel DB, Hartel FW, Shanbhag K, Chilukuri R, Fragoso G, Coronado SD, Reeves DM, Hadfield JB, Ludet C, Covitz PA.
Affliation: National Cancer Institute Center for Bioinformatics (NCICB), 2115 E. Jefferson St., Suite 5000, Rockville, MD 20852, USA.
Journal: J Biomed Inform. :
Publication Date: Monday, May 21, 2007
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A survey of quality assurance practices in biomedical open source software projects.
by Koru G, El Emam K, Neisa A, Umarji M.
Affliation: CHEO Research Institute, 401 Smyth Rd, Ottawa, ON K1H 8L1, Canada. kelemam@uottawa.ca.
Journal: J Med Internet Res. 9(2):e8
Publication Date: Monday, May 21, 2007
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Estimating the Efficiency of Fish Cross-Species cDNA Microarray Hybridization.
by Cohen R, Chalifa-Caspi V, Williams TD, Auslander M, George SG, Chipman JK, Tom M.
Affliation: National Institute for Biotechnology in the Negev, Ben Gurion University of the Negev, Beer-Sheva, 84105, Israel.
Journal: Mar Biotechnol (NY). :
Publication Date: Monday, May 21, 2007
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Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations.
by Toleno DM, Morrell PL, Clegg MT.
Affliation: Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697, U.S.A.
Journal: Bioinformatics. :
Publication Date: Friday, May 18, 2007
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T-Pile - a package for thermodynamic calculations for biomolecules.
by Gront D, Kolinski A.
Affliation: Warsaw University, Faculty of Chemistry, Pasteura 1 02-093 Warsaw, Poland.
Journal: Bioinformatics. :
Publication Date: Friday, May 18, 2007
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Medicinal chemistry and bioinformatics - current trends in drugs discovery with networks topological indices.
by González-Díaz H, Vilar S, Santana L, Uriarte E.
Affliation: Department of Organic Chemistry & Institute of Industrial Pharmacy, Faculty of Pharmacy, University of Santiago de Compostela, 15782, Spain. qosanti@yahoo.es; gonzalezdiazh@yahoo.es.
Journal: Curr Top Med Chem. 7(10):1025-39
Publication Date: Friday, May 18, 2007
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Probability-Based Pattern Recognition and Statistical Framework for Randomization: Modeling Tandem Mass Spectrum/Peptide Sequence False Match Frequencies.
by Feng J, Naiman DQ, Cooper B.
Affliation: Department of Applied Mathematics and Statistics, The Johns Hopkins University, Baltimore, Maryland, USA.
Journal: Bioinformatics. :
Publication Date: Friday, May 18, 2007
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Isolated ZP-N domains constitute the N-terminal extensions of Zona Pellucida proteins.
by Callebaut I, Mornon JP, Monget P.
Affliation: Département de Biologie Structurale, IMPMC UMR 7590; Universités Pierre et Marie Curie-Paris6 et Denis Diderot-Paris7; CNRS; Campus Boucicaut, 140 rue de Lourmel, 75015 Paris, France.
Journal: Bioinformatics. :
Publication Date: Friday, May 18, 2007
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Computational Identification of Candidate Loci for Recessively Inherited Mutation Using High Throughput SNP Arrays.
by Laakso M, Tuupanen S, Karhu A, Lehtonen R, Aaltonen L, Hautaniemi S.
Affliation: Computational Systems Biology Laboratory, Institute of Biomedicine, University of Helsinki, Department of Medical Genetics, University of Helsinki, Genome-Scale Biology Research Program, Biomedicum Helsinki.
Journal: Bioinformatics. :
Publication Date: Friday, May 18, 2007
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Structural and functional comparison of the non-structural protein 4B in flaviviridae.
by Welsch C, Albrecht M, Maydt J, Herrmann E, Welker MW, Sarrazin C, Scheidig A, Lengauer T, Zeuzem S.
Affliation: Internal Medicine II, Saarland University Hospital, Kirrberger Straße, 66421 Homburg/Saar, Germany; Max Planck Institute for Informatics, Stuhlsatzenhausweg 85, 66123 Saarbrücken, Germany.
Journal: J Mol Graph Model. :
Publication Date: Thursday, May 17, 2007
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Bio-basis function neural networks in protein data mining.
by Yang ZR, Hamer R.
Affliation: Department of Computer Science, University of Exeter, UK. z.r.yang@ex.ac.uk.
Journal: Curr Pharm Des. 13(14):1403-13
Publication Date: Wednesday, May 16, 2007
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