An ontology for protein data models.
by Sidhu A, Dillon T, Chang E.
Affliation: Member, IEEE, Faculty of Information Technology, University of Technology Sydney, Australia, e-mail: asidhu@it.uts.edu.au.
Journal: Conf Proc IEEE Eng Med Biol Soc. 6:6120-3
Publication Date: Tuesday, February 06, 2007
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Internet Applications for Computational Biology, the CMISS Web Browser Extension and and Use in Education.
by Stevens C, Blackett S, Legrice IJ, Hunter PJ.
Affliation: Inst. of Bioeng., Auckland Univ.
Journal: Conf Proc IEEE Eng Med Biol Soc. 1:849-50
Publication Date: Tuesday, February 06, 2007
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A distributed approach for a multiple sequence alignment algorithm using a parallel virtual machine.
by Lopes H, Moritz G.
Affliation: Bioinformatics Laboratory/CPGEI, Federal Center for Technological Education of Parana, Av. 7 de setembro, 3165 - 80230-901 Curitiba, Brazil hslopes@cpgei.cefetpr.br.
Journal: Conf Proc IEEE Eng Med Biol Soc. 3:2843-6
Publication Date: Tuesday, February 06, 2007
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Biophysics and bioinformatics reveal structural differences of the two peripheral stalk subunits in chloroplast ATP synthase.
by Poetsch A, Berzborn RJ, Heberle J, Link TA, Dencher NA, Seelert H.
Affliation: Lehrstuhl für Biochemie der Pflanzen, Ruhr-Universität Bochum, Universitätsstr. 150, D-44801 Bochum, Germany.
Journal: J Biochem (Tokyo). :
Publication Date: Tuesday, February 06, 2007
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New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.
by Piekna-Przybylska D, Decatur WA, Fournier MJ.
Affliation: Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, Massachusetts 01003, USA.
Journal: RNA. :
Publication Date: Tuesday, February 06, 2007
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2D-RNA-coupling numbers: A new computational chemistry approach to link secondary structure topology with biological function.
by González-Díaz H, Agüero-Chapin G, Varona J, Molina R, Delogu G, Santana L, Uriarte E, Podda G.
Affliation: Department of Organic Chemistry, University of Santiago de Compostela, Santiago de Compostela 15782, Spain.
Journal: J Comput Chem. :
Publication Date: Tuesday, February 06, 2007
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NetMatch: a Cytoscape Plugin for Searching Biological Networks.
by Ferro A, Giugno R, Pigola G, Pulvirenti A, Skripin D, Bader GD, Shasha D.
Affliation: Dipartimento di Matematica e Informatica, Università di Catania, Viale A. Doria 6, 1-95125 Catania, Italy; e-mail: {fferro,giugno,pigola,apulvirenti,skripin}@dmi.unict.it.
Journal: Bioinformatics. :
Publication Date: Monday, February 05, 2007
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Genome re-annotation: a wiki solution?
by Salzberg SL.
Affliation: Center for Bioinformatics and Computational Biology and Department of Computer Science, 3125 Biomolecular Sciences Building, University of Maryland, College Park, MD 20742, USA. salzberg@umiacs.umd.edu.
Journal: Genome Biol. 8(1):102
Publication Date: Monday, February 05, 2007
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MemO: A consensus approach to the annotation of a protein's membrane organization.
by Davis MJ, Zhang F, Yuan Z, Teasdale RD.
Affliation: Institute for Molecular Bioscience and ARC Centre in Bioinformatics, University of Queensland, St. Lucia, 4072, Australia. Email: R.Teasdale@imb.uq.edu.au.
Journal: In Silico Biol. 6(5):387-99
Publication Date: Monday, February 05, 2007
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Comparative integromics on FZD7 orthologs: Conserved binding sites for PU.1, SP1, CCAAT-box and TCF/LEF/SOX transcription factors within 5'-promoter region of mammalian FZD7 orthologs.
by Katoh M, Katoh M.
Affliation: M&M Medical BioInformatics, Hongo 113-0033, Japan.
Journal: Int J Mol Med. 19(3):529-33
Publication Date: Friday, February 02, 2007
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Bioinformatics and computational systems biology: at the cross roads of biology, engineering and computation.
by Subramaniam S.
Affliation: California Univ., San Diego, CA, USA.
Journal: Conf Proc IEEE Eng Med Biol Soc. 7:5458
Publication Date: Friday, February 02, 2007
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Protein engineering.
by Longhi S, Ferron F, Egloff MP.
Affliation:
Journal: Methods Mol Biol. 363:59-90
Publication Date: Friday, February 02, 2007
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Conserved POU-binding site linked to SP1-binding site within FZD5 promoter: Transcriptional mechanisms of FZD5 in undifferentiated human ES cells, fetal liver/spleen, adult colon, pancreatic islet, and diffuse-type gastric cancer.
by Katoh Y, Katoh M.
Affliation: M&M Medical BioInformatics, Hongo 113-0033, Japan.
Journal: Int J Oncol. 30(3):751-5
Publication Date: Friday, February 02, 2007
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A window into biocatalysis and biotransformations.
by Coward-Kelly G, Chen RR.
Affliation: Novozymes North America, Franklinton, North Carolina 27525, and School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0100.
Journal: Biotechnol Prog. 2007 Jan-Feb;23(1):52-4
Publication Date: Friday, February 02, 2007
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Membrane Topology Prediction by Hydropathy Profile Alignment: Membrane Topology of the Na(+)-Glutamate Transporter GltS.
by Dobrowolski A, Sobczak-Elbourne I, Lolkema JS.
Affliation: Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands.
Journal: Biochemistry. :
Publication Date: Friday, February 02, 2007
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SNPassoc: an R package to perform whole genome association studies.
by González JR, Armengol L, Solé X, Guinó E, Mercader JM, Estivill X, Moreno V.
Affliation: Genes and Disease Program, Centre for Genomic Regulation, Barcelona, Spain. Unit of Biostatistics and Bioinformatics, Epidemiology Service, IDIBELL, Catalan Institute of Oncology, Barcelona, Spain.
Journal: Bioinformatics. :
Publication Date: Thursday, February 01, 2007
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De Novo SVM Classification of Precursor MicroRNAs from Genomic Pseudo Hairpins Using Global and Intrinsic Folding Measures.
by Kwang Loong SN, Mishra SK.
Affliation: Bioinformatics Institute, 30 Biopolis Street, #07-01, Matrix, Singapore 138671.
Journal: Bioinformatics. :
Publication Date: Thursday, February 01, 2007
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Ontology development for biological systems: Immunology.
by Diehl AD, Lee JA, Scheuermann RH, Blake JA.
Affliation: Mouse Genome Informatics, The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04605, USA, Department of Pathology, Division of Biomedical Informatics, U.T. Southwestern Medical Center, 5323 Harry Hines Blvd. Dallas, TX 75390-9072, USA.
Journal: Bioinformatics. :
Publication Date: Thursday, February 01, 2007
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COPYCAT: Co-phylogenetic Analysis tool.
by Meier-Kolthoff JP, Auch AF, Huson DH, Göker M.
Affliation: Center for Bioinformatics (ZBIT), Sand 14, Tübingen, University of Tübingen, Germany.
Journal: Bioinformatics. :
Publication Date: Thursday, February 01, 2007
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Tool developments for structure-function studies of host defense peptides.
by Wang G.
Affliation: The Structure-Fun Laboratory, Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, 986805 Nebraska Medical Center, Omaha, NE 68198-6805, USA. gwang@unmc.edu.
Journal: Protein Pept Lett. 14(1):57-69
Publication Date: Thursday, February 01, 2007
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