Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A.
by Vencato M, Tian F, Alfano JR, Buell CR, Cartinhour S, DeClerck GA, Guttman DS, Stavrinides J, Joardar V, Lindeberg M, Bronstein PA, Mansfield JW, Myers CR, Collmer A, Schneider DJ.
Affliation: Department of Plant Pathology, Cornell University, Ithaca, NY 14853, USA.
Journal: Mol Plant Microbe Interact. 19(11):1193-206
Publication Date: Tuesday, October 31, 2006
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An insight-based longitudinal study of visual analytics.
by Saraiya P, North C, Lam V, Duca KA.
Affliation: Department of Computer Science, Virginia Tech, Blacksburg 24061-0106, USA. psaraiya@vt.edu
Journal: IEEE Trans Vis Comput Graph. 2006 Nov-Dec;12(6):1511-22
Publication Date: Tuesday, October 31, 2006
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Using silico methods predicting ligands for orphan GPCRs.
by Jiang Z, Zhou Y.
Affliation: Hubei Bioinformatics and Molecular Imaging Key Laboratory, School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, China.
Journal: Curr Protein Pept Sci. 7(5):459-64
Publication Date: Tuesday, October 31, 2006
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Latest development in drug discovery on G protein-coupled receptors.
by Lundstrom K.
Affliation: BioXtal,Chemin des Croisettes 22, CH-1066 Epalinges, Switzerland. Kenneth.Lundstrom@mepnet.org
Journal: Curr Protein Pept Sci. 7(5):465-70
Publication Date: Tuesday, October 31, 2006
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Identification and genetic mapping of highly polymorphic microsatellite loci from an EST database of the septoria tritici blotch pathogen Mycosphaerella graminicola.
by Goodwin SB, van der Lee TA, Cavaletto JR, Te Lintel Hekkert B, Crane CF, Kema GH.
Affliation: USDA-ARS, Crop Production and Pest Control Research Unit, Department of Botany and Plant Pathology, 915 West State Street, Purdue University, West Lafayette, IN 47907-2054, USA.
Journal: Fungal Genet Biol. :
Publication Date: Tuesday, October 31, 2006
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The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment.
by Boekhorst J, Wels M, Kleerebezem M, Siezen RJ.
Affliation: Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, 6500HB Nijmegen, The Netherlands.
Journal: Microbiology. 152(Pt 11):3175-83
Publication Date: Tuesday, October 31, 2006
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A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank.
by Burkhardt K, Schneider B, Ory J.
Affliation: National Center for Biotechnology Information, United States of America. kyle@rcsb.rutgers.edu
Journal: PLoS Comput Biol. 2(10):e99
Publication Date: Monday, October 30, 2006
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A combined bioinformatics and chemoinformatics approach for the development of new antiparasitic drugs.
by Krasky A, Rohwer A, Schroeder J, Selzer PM.
Affliation: Drug Discovery/BioChemInformatics, Intervet Innovation GmbH, Zur Propstei, 55270 Schwabenheim, Germany.
Journal: Genomics. :
Publication Date: Monday, October 30, 2006
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Molecular profiling techniques and bioinformatics in cancer research.
by Manning AT, Garvin JT, Shahbazi RI, Miller N, McNeill RE, Kerin MJ.
Affliation: Department of Surgery, Clinical Science Institute, University College Hospital, Galway, Ireland.
Journal: Eur J Surg Oncol. :
Publication Date: Monday, October 30, 2006
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Identification of Chlorophyllide a Oxygenase in Prochlorococcus Genome by Comparative Genomic Approach.
by Satoh S, Tanaka A.
Affliation: Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo 060-0810, Japan.
Journal: Plant Cell Physiol. :
Publication Date: Monday, October 30, 2006
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Testis-specific expression and genomic multiplicity of the rat Rtdpoz genes that encode bipartite TRAF- and POZ/BTB-domain proteins.
by Choo KB, Hsu MC, Chong KY, Huang CJ.
Affliation: Department of Medical Research and Education, Taipei Veterans General Hospital, Shipai, Taipei, 112 Taiwan; Institute of Medical Biotechnology, National Yang Ming University, Shipai, Taipei, 112 Taiwan.
Journal: Gene. :
Publication Date: Monday, October 30, 2006
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Sex-lethal is a target of Bruno-mediated translational repression in promoting the differentiation of stem cell progeny during Drosophila oogenesis.
by Wang Z, Lin H.
Affliation: Department of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Journal: Dev Biol. :
Publication Date: Friday, October 27, 2006
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Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.
by Ohler U.
Affliation: Institute for Genome Sciences and Policy Durham, NC 27708, USA.
Journal: Nucleic Acids Res. :
Publication Date: Friday, October 27, 2006
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From the genome to the proteome: uncovering peptides in the Apis brain.
by Hummon AB, Richmond TA, Verleyen P, Baggerman G, Huybrechts J, Ewing MA, Vierstraete E, Rodriguez-Zas SL, Schoofs L, Robinson GE, Sweedler JV.
Affliation: Department of Chemistry, University of Illinois, Urbana, IL 61801, USA.
Journal: Science. 314(5799):647-9
Publication Date: Friday, October 27, 2006
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The Initiator Motif is Preferentially Used as the Core Promoter Element in Ionizing Radiation-Responsive Genes.
by Wu J, Daino K, Ichimura S, Nenoi M.
Affliation:
Journal: Radiat Res. 166(5):810-3
Publication Date: Friday, October 27, 2006
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A jumping off point.
by Lewis R.
Affliation:
Journal: Nature. 443(7111):600-1
Publication Date: Thursday, October 26, 2006
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Unraveling transcriptional control and cis-regulatory codes using the software suite GENEACT.
by Cheung TH, Kwan YL, Hamady M, Liu X.
Affliation:
Journal: Genome Biol. 7(10):R97
Publication Date: Thursday, October 26, 2006
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[Establishment of protein expression profile of human normal colonic epithelia.]
by Zhu G, Zheng J, Chen ZC, Li M, Li MY, Zhang PF, Tang CE, Yuan WJ, Xiao ZQ.
Affliation: Key Laboratory of Cancer Proteomics of Ministry of Health of China,Xiangya Hospital,Central South University,Cancer Research Institute,Xiangya School of Medicine,Central South University,Changsha 410078,China.
Journal: Zhong Nan Da Xue Xue Bao Yi Xue Ban. 31(5):696-701
Publication Date: Wednesday, October 25, 2006
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fjoin: Simple and Efficient Computation of Feature Overlaps.
by Richardson JE.
Affliation: Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, Maine.
Journal: J Comput Biol. 13(8):1457-64
Publication Date: Wednesday, October 25, 2006
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Evaluation of the antibacterial spectrum of drosocin analogues.
by Bikker FJ, Kaman-van Zanten WE, de Vries-van de Ruit AM, Voskamp-Visser I, van Hooft PA, Mars-Groenendijk RH, de Visser PC, Noort D.
Affliation: TNO Defence, Security and Safety, PO Box 45, 2280 AA Rijswijk, the Netherlands.
Journal: Chem Biol Drug Des. 68(3):148-53
Publication Date: Wednesday, October 25, 2006
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