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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - July, 2006

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Genotyping of Campylobacter jejuni using seven single-nucleotide polymorphisms in combination with flaA short variable region sequencing.
by Price EP, Thiruvenkataswamy V, Mickan L, Unicomb L, Rios RE, Huygens F, Giffard PM.
Affliation: 1Cooperative Research Centre for Diagnostics, Queensland University of Technology (Gardens Point Campus), GPO Box 2434, Brisbane, Queensland 4001, Australia.
Journal: J Med Microbiol. 55(Pt 8):1061-70
Publication Date: Wednesday, July 19, 2006
PubMed citation

Computational biology in the study of cardiac ion channels and cell electrophysiology.
by Rudy Y, Silva JR.
Affliation: Cardiac Bioelectricity & Arrhythmia Center and the Department of Biomedical Engineering, Washington University in St. Louis, MO, USA.
Journal: Q Rev Biophys. :1-60
Publication Date: Wednesday, July 19, 2006
PubMed citation

NERVE: New Enhanced Reverse Vaccinology Environment.
by Vivona S, Bernante F, Filippini F.
Affliation:
Journal: BMC Biotechnol. 6(1):35
Publication Date: Wednesday, July 19, 2006
PubMed citation

The identification and characterization of a testis-specific cDNA during spermatogenesis.
by Chen Y, Hu J, Song P, Gong W.
Affliation: Laboratory of Molecular Genetics and Developmental Biology, College of Life Science, Wuhan University, Wuhan, 430072, China, pingsongps@yahoo.com.cn.
Journal: Cell Mol Biol Lett. 11(1):80-9
Publication Date: Tuesday, July 18, 2006
PubMed citation

Detection of hypopharyngeal squamous cell carcinoma using serum proteomics.
by Zhou L, Cheng L, Tao L, Jia X, Lu Y, Liao P.
Affliation: Department of Otolaryngology-Head and Neck Surgery, Fudan University Affiliated Eye, Ear, Nose and Throat Hospital, Shanghai, China.
Journal: Acta Otolaryngol. 126(8):853-60
Publication Date: Tuesday, July 18, 2006
PubMed citation

Identification and fine mapping of AvrPi15, a novel avirulence gene of Magnaporthe grisea.
by Ma JH, Wang L, Feng SJ, Lin F, Xiao Y, Pan QH.
Affliation: Laboratory of Plant Resistance and Genetics, College of Resources and Environmental Sciences, South China Agricultural University, Guangzhou, 510642, China, panqh@scau.edu.cn.
Journal: Theor Appl Genet. :
Publication Date: Monday, July 17, 2006
PubMed citation

Global topological features of cancer proteins in the human interactome.
by Jonsson PF, Bates PA.
Affliation: Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, 44 Lincoln's Inn Fields, London, WC2A 3PX, UK.
Journal: Bioinformatics. :
Publication Date: Monday, July 17, 2006
PubMed citation

KemaDom: a web server for domain prediction using kernel machine with local context.
by Chen L, Wang W, Ling S, Jia C, Wang F.
Affliation: Shanghai Key Laboratory of Intelligent Information Processing, Fudan University Shanghai, PR China.
Journal: Nucleic Acids Res. 34(Web Server issue):W158-63
Publication Date: Monday, July 17, 2006
PubMed citation

AliWABA: alignment on the web through an A-Bruijn approach.
by Jones NC, Zhi D, Raphael BJ.
Affliation: Department of Computer Science and Engineering, University of California San Diego La Jolla, CA, USA.
Journal: Nucleic Acids Res. 34(Web Server issue):W613-6
Publication Date: Monday, July 17, 2006
PubMed citation

SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery.
by Jewell E, Robinson A, Savage D, Erwin T, Love CG, Lim GA, Li X, Batley J, Spangenberg GC, Edwards D.
Affliation: Department of Primary Industries, Plant Biotechnology Centre, Primary Industries Research Victoria, Victorian AgriBiosciences Centre 1 Park Drive, Bundoora, Victoria 3083, Australia.
Journal: Nucleic Acids Res. 34(Web Server issue):W656-9
Publication Date: Monday, July 17, 2006
PubMed citation

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
by Kikin O, D'Antonio L, Bagga PS.
Affliation: Bioinformatics, School of Theoretical and Applied Science, Ramapo College of New Jersey Mahwah, NJ 07430, USA.
Journal: Nucleic Acids Res. 34(Web Server issue):W676-82
Publication Date: Monday, July 17, 2006
PubMed citation



Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences.
by Scaria V, Hariharan M, Arora A, Maiti S.
Affliation: GN Ramachandran Knowledge Center for Genome Informatics.
Journal: Nucleic Acids Res. 34(Web Server issue):W683-5
Publication Date: Monday, July 17, 2006
PubMed citation

CorGen--measuring and generating long-range correlations for DNA sequence analysis.
by Messer PW, Arndt PF.
Affliation: Max Planck Institute for Molecular Genetics Ihnestrasse 73, 14195 Berlin, Germany.
Journal: Nucleic Acids Res. 34(Web Server issue):W692-5
Publication Date: Monday, July 17, 2006
PubMed citation

PLOTREP: a web tool for defragmentation and visual analysis of dispersed genomic repeats.
by Tóth G, Deák G, Barta E, Kiss GB.
Affliation: Agricultural Biotechnology Center, Gödöllo Szent-Györgyi Albert u. 4, H-2100, Hungary.
Journal: Nucleic Acids Res. 34(Web Server issue):W708-13
Publication Date: Monday, July 17, 2006
PubMed citation

metaSHARK: a WWW platform for interactive exploration of metabolic networks.
by Hyland C, Pinney JW, McConkey GA, Westhead DR.
Affliation: Faculty of Biological Sciences, University of Leeds Clarendon Way, Leeds LS2 9JT, UK.
Journal: Nucleic Acids Res. 34(Web Server issue):W725-8
Publication Date: Monday, July 17, 2006
PubMed citation

OPAAS: a web server for optimal, permuted, and other alternative alignments of protein structures.
by Shih ES, Gan RC, Hwang MJ.
Affliation: Institute of Biomedical Sciences, Academia Sinica Taipei 11529, Taiwan.
Journal: Nucleic Acids Res. 34(Web Server issue):W95-8
Publication Date: Monday, July 17, 2006
PubMed citation

Computational Prediction and Experimental Verification of HVA1-like Abscisic Acid Responsive Promoters in Rice (Oryza sativa).
by Ross C, Shen QJ.
Affliation: Bioinformatics Core, Department of Biological Sciences, University of Nevada, Las Vegas, NV, 89154, USA, jeffery.shen@unlv.edu.
Journal: Plant Mol Biol. :
Publication Date: Monday, July 17, 2006
PubMed citation

De novo and molecular target-independent discovery of orally bioavailable lead compounds for neurological disorders.
by Wing LK, Behanna HA, Van Eldik LJ, Watterson DM, Ranaivo HR.
Affliation: Center for Drug Discovery and Chemical Biology, Northwestern University, Chicago, IL, USA. m-watterson@northwestern.edu.
Journal: Curr Alzheimer Res. 3(3):205-14
Publication Date: Monday, July 17, 2006
PubMed citation

Propionyl-CoA and adenosylcobalamin metabolism in Caenorhabditis elegans: Evidence for a role of methylmalonyl-CoA epimerase in intermediary metabolism.
by Chandler RJ, Aswani V, Tsai MS, Falk M, Wehrli N, Stabler S, Allen R, Sedensky M, Kazazian HH, Venditti CP.
Affliation: Genetic Disease Research Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Journal: Mol Genet Metab. :
Publication Date: Monday, July 17, 2006
PubMed citation

BBP: Brucella genome annotation with literature mining and curation.
by Xiang Z, Zheng W, He Y.
Affliation:
Journal: BMC Bioinformatics. 7(1):347
Publication Date: Monday, July 17, 2006
PubMed citation

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Last Updated: 5 August 2006.