Discovery and hypothesis generation through bioinformatics.
by Dopazo J, Aloy P.
Affliation: Bioinformatics Department, CIPF, Autopista del Saler 16, E-46013 Valencia, Spain. jdopazo@ochoa.fib.es.
Journal: Genome Biol. 7(2):307
Publication Date: Wednesday, March 08, 2006
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Convergence of the proteomic pattern in cancer.
by Müller U, Ernst G, Melle C, Guthke R, von Eggeling F.
Affliation: Core Unit Chip Application (CUCA), Institute of Human Genetics and Anthropology, Friedrich-Schiller-University, 07740 Jena, Germany; aura optik gmbh, Wildenbruchstraße 15, 07745 Jena, Germany.
Journal: Bioinformatics. :
Publication Date: Wednesday, March 08, 2006
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New Escherichia coli outer membrane proteins identified through prediction and experimental verification.
by Marani P, Wagner S, Baars L, Genevaux P, De Gier JW, Nilsson I, Casadio R, Von Heijne G.
Affliation:
Journal: Protein Sci. :
Publication Date: Wednesday, March 08, 2006
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Annotated proteome of a human T-cell lymphoma.
by Crockett DK, Seiler CE, Elenitoba-Johnson KS, Lim MS.
Affliation: Department of Pathology, University of Utah School of Medicine, 50 North Medical Drive, Room A565, Salt Lake City, Utah 84132. megan.lim@path.utah.edu.
Journal: J Biomol Tech. 16(4):341-6
Publication Date: Wednesday, March 08, 2006
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Analysis of Proteinaceous Components of the Organic Matrix of Endoskeletal Sclerites from the Alcyonarian Lobophytum crassum.
by Rahman MA, Isa Y, Takemura A, Uehara T.
Affliation: Department of Marine and Environmental Sciences, Faculty of Science, University of the Ryukyus, 1 Senbaru, Nishihara-cho, Okinawa, 903-0213, Japan, k038563@eve.u-ryukyu.ac.jp or azizur31@yahoo.com.
Journal: Calcif Tissue Int. :
Publication Date: Wednesday, March 08, 2006
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VANTED: A system for advanced data analysis and visualization in the context of biological networks.
by Junker BH, Klukas C, Schreiber F.
Affliation:
Journal: BMC Bioinformatics. 7(1):109
Publication Date: Tuesday, March 07, 2006
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CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure.
by Bock C, Paulsen M, Tierling S, Mikeska T, Lengauer T, Walter J.
Affliation: Max-Planck-Institut für Informatik, Saarbrücken, Germany.
Journal: PLoS Genet. 2(3):e26
Publication Date: Tuesday, March 07, 2006
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Characterization of human gene encoding SLA/LP autoantigen and its conserved homologs in mouse, fish, fly, and worm.
by Wang CX, Teufel A, Cheruti U, Grotzinger J, Galle PR, Lohse AW, Herkel J.
Affliation: Department of Medicine, University Medical Centre Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany. jherkel@uke.uni-mainz.de.
Journal: World J Gastroenterol. 12(6):902-7
Publication Date: Tuesday, March 07, 2006
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Identification of Protein Domains by Shotgun Proteolysis.
by Christ D, Winter G.
Affliation: Division for Protein and Nucleic Acid Chemistry, Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 1TQ, UK.
Journal: J Mol Biol. :
Publication Date: Monday, March 06, 2006
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Array-based proteomics: mapping of protein circuitries for diagnostics, prognostics, and therapy guidance in cancer.
by Gulmann C, Sheehan K, Kay E, Liotta L, Petricoin E.
Affliation: NCI-FDA Clinical Proteomics Program, Laboratory of Pathology, National Cancer Institute, Bethesda, MD, USA.
Journal: J Pathol. 208(5):595-606
Publication Date: Monday, March 06, 2006
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A quantitative analysis of secondary RNA structure using domination based parameters on trees.
by Haynes T, Knisley D, Seier E, Zou Y.
Affliation:
Journal: BMC Bioinformatics. 7(1):108
Publication Date: Monday, March 06, 2006
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Structural e-bioinformatics and drug designdagger.
by Carpy AJ, Marchand-Geneste N.
Affliation: Laboratoire de Physico- & Toxico-Chimie (LPTC) des Systèmes Naturels UMR 5472 CNRS, Université de Bordeaux 1 351, Cours de la Libération, 33405 Talence cedex, France.
Journal: SAR QSAR Environ Res. 17(1):1-10
Publication Date: Friday, March 03, 2006
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Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins.
by Cao R, Li X, Liu Z, Peng X, Hu W, Wang X, Chen P, Xie J, Liang S.
Affliation: Key Laboratory of Protein Chemistry and Developmental Biology of Education Committee, College of Life Sciences, Hunan Normal University, Changsha, Peoples Republic of China.
Journal: J Proteome Res. 5(3):634-42
Publication Date: Friday, March 03, 2006
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Bioinformatics approach to predicting HIV drug resistance.
by Cordes F, Kaiser R, Selbig J.
Affliation: Division Scientific Computing, Department Numerical Analysis & Modeling, Konrad-Zuse-Zentrum, Takustr. 7, D-14195 Berlin-Dahlem, Germany. cordes@zib.de
Journal: Expert Rev Mol Diagn. 6(2):207-15
Publication Date: Friday, March 03, 2006
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A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins.
by Abba' S, Ghignone S, Bonfante P.
Affliation:
Journal: BMC Genomics. 7(1):39
Publication Date: Friday, March 03, 2006
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Mapping and identification of disease responsible genes based on genetic resource reservation and bioinformatics approach.
by Xia JH, Xia K, Pan Q, Long ZG, Dai HP, Wu LQ, Liang DS, Cai F.
Affliation: National Lab of Medical Genetics of China, Central South University, Changsha, China.
Journal: Beijing Da Xue Xue Bao. 38(1):21-4
Publication Date: Friday, March 03, 2006
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The family 21 carbohydrate binding module of glucoamylase from Rhizopus oryzae consists of two sites playing distinct roles in ligand binding.
by Chou WI, Pai TW, Liu SH, Hsiung BK, Chang MD.
Affliation:
Journal: Biochem J. :
Publication Date: Thursday, March 02, 2006
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A flexible representation of omic knowledge for thorough analysis of microarray data.
by Hasegawa Y, Seki M, Mochizuki Y, Heida N, Hirosawa K, Okamoto N, Sakurai T, Satou M, Akiyama K, Iida K, Lee K, Kanaya S, Demura T, Shinozaki K, Konagaya A, Toyoda T.
Affliation:
Journal: Plant Methods. 2(1):5
Publication Date: Thursday, March 02, 2006
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Discovery and validation of new protein biomarkers for urothelial cancer: a prospective analysis.
by Theodorescu D, Wittke S, Ross MM, Walden M, Conaway M, Just I, Mischak H, Frierson HF.
Affliation: Department of Molecular Physiology, University of Virginia, Charlottesville, VA, USA; Department of Urology and Mellon Prostate Cancer Institute, University of Virginia, Charlottesville, VA, USA.
Journal: Lancet Oncol. 7(3):230-40
Publication Date: Thursday, March 02, 2006
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A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes.
by Pipkin ME, Lichtenheld MG.
Affliation: Department of Microbiology and Immunology, University of Miami, Miller School of Medicine, Miami, FL 33136, USA.
Journal: Nucleic Acids Res. 34(4):e34
Publication Date: Thursday, March 02, 2006
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