Computational toxicology: heading toward more relevance in drug discovery and development.
by Johnson DE, Rodgers AD.
Affliation: Emiliem Inc, 6027 Christie Avenue PO Box 99200, Emeryville, CA 94608, USA. daleejohnson@sbcglobal.net
Journal: Curr Opin Drug Discov Devel. 9(1):29-37
Publication Date: Tuesday, January 31, 2006
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Capturing expert knowledge with argumentation: a case study in bioinformatics.
by Jefferys BR, Kelley LA, Sergot MJ, Fox J, Sternberg MJ.
Affliation: Biochemistry Building, Division of Molecular Biosciences, Imperial College, London SW7 2AZ.
Journal: Bioinformatics. :
Publication Date: Tuesday, January 31, 2006
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Functional genomics of hepatocellular carcinoma.
by Thorgeirsson SS, Lee JS, Grisham JW.
Affliation: Laboratory of Experimental Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Journal: Hepatology. 43(S1):S145-S150
Publication Date: Tuesday, January 31, 2006
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HaptenDB: a comprehensive database of haptens, carrier proteins and anti-hapten antibodies.
by Singh MK, Srivastava S, Raghava GP, Varshney GC.
Affliation: Institute of Microbial Technology Chandigarh, India.
Journal: Bioinformatics. 22(2):253-5
Publication Date: Monday, January 30, 2006
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Cytotoxic T-Lymphocyte Epitope Vaccination Protects against Human Metapneumovirus Infection and Disease in Mice.
by Herd KA, Mahalingam S, Mackay IM, Nissen M, Sloots TP, Tindle RW.
Affliation: Sir Albert Sakzewski Virus Research Centre, Royal Children's Hospital, Herston Road, Herston QLD 4029, Australia. r.tindle@uq.edu.au.
Journal: J Virol. 80(4):2034-44
Publication Date: Friday, January 27, 2006
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Discovering semantic features in the literature: a foundation for building functional associations.
by Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A.
Affliation:
Journal: BMC Bioinformatics. 7(1):41
Publication Date: Friday, January 27, 2006
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SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms.
by Van den Bulcke T, Van Leemput K, Naudts B, van Remortel P, Ma H, Verschoren A, De Moor B, Marchal K.
Affliation:
Journal: BMC Bioinformatics. 7(1):43
Publication Date: Friday, January 27, 2006
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Tumor necrosis factor-alpha-induced protein 1 and immunity to hepatitis B virus.
by Lin MC, Lee NP, Zheng N, Yang PH, Wong OG, Kung HF, Hui CK, Luk JM, Lau GK.
Affliation: Department of Medicine Rm 1838, Queen Mary Hospital 102 Pokfulum Road, Hong Kong SAR, China. gkklau@netvigator.com.
Journal: World J Gastroenterol. 11(48):7564-8
Publication Date: Thursday, January 26, 2006
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COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.
by Jothi R, Zotenko E, Tasneem A, Przytycka TM.
Affliation: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Journal: Bioinformatics. :
Publication Date: Wednesday, January 25, 2006
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Ontologies for data and knowledge sharing in biology: plant ROS signaling as a case study.
by Strizh IG.
Affliation: Plant Physiology Department, Biology Faculty, M.V. Lomonosov Moscow State University, Leninskie Gory, 119992 Moscow, Russia.
Journal: Bioessays. 28(2):199-210
Publication Date: Wednesday, January 25, 2006
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VISSA: a program to visualize structural features from structure sequence alignment.
by Li W, Godzik A.
Affliation: Burnham Institute for Medical Research, La Jolla, CA 92037, USA.
Journal: Bioinformatics. :
Publication Date: Wednesday, January 25, 2006
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CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS).
by Zhou F, Xue Y, Yao X, Xu Y.
Affliation: Computational Systems Biology Laboratory, Department of Biochemical and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.
Journal: Bioinformatics. :
Publication Date: Wednesday, January 25, 2006
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Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis.
by Tkaczuk KL, Obarska A, Bujnicki JM.
Affliation:
Journal: BMC Evol Biol. 6(1):6
Publication Date: Wednesday, January 25, 2006
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Argonaute and RNA - getting into the groove.
by Song JJ, Joshua-Tor L.
Affliation: Watson School of Biological Sciences and W.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Journal: Curr Opin Struct Biol. :
Publication Date: Wednesday, January 25, 2006
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Sub-classification of the rbcc/trim superfamily reveals a novel motif necessary for microtubule binding.
by Short KM, Cox TC.
Affliation: Anatomy and Cell Biology, Monash University, Melbourne, Victoria 3800.
Journal: J Biol Chem. :
Publication Date: Wednesday, January 25, 2006
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Regulation of gene expression by alternative untranslated regions.
by Hughes TA.
Affliation: Leeds Institute for Molecular Medicine Level 4, JIF Building, St. James's University Hospital, University of Leeds, Leeds, UK, LS9 7TF.
Journal: Trends Genet. :
Publication Date: Tuesday, January 24, 2006
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Proteomics and Bioinformatics Strategies to Design Countermeasures against Infectious Threat Agents.
by Khan AS, Mujer CV, Alefantis TG, Connolly JP, Mayr UB, Walcher P, Lubitz W, Delvecchio VG.
Affliation: Defense Threat Reduction Agency, Alexandria, Virginia, Vital Probes, Incorporated, Mayfield, Pennsylvania 18433, and BIRD-C, GmbH & Co. KEG, Vienna, Austria.
Journal: J Chem Inf Model. 2006 Jan-Feb;46(1):111-5
Publication Date: Monday, January 23, 2006
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Automatic extension of gene ontology with flexible identification of candidate terms.
by Lee JB, Kim JJ, Park JC.
Affliation: Computer Science Division and AITrc, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701 South Korea.
Journal: Bioinformatics. :
Publication Date: Monday, January 23, 2006
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Accurate Prediction of the Functional Significance of Single Nucleotide Polymorphisms and Mutations in the ABCA1 Gene.
by Brunham LR, Singaraja RR, Pape TD, Kejariwal A, Thomas PD, Hayden MR.
Affliation: Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, Child and Family Research Institute, University of British Columbia, Vancouver, British Columbia.
Journal: PLoS Genet. 1(6):e83
Publication Date: Monday, January 23, 2006
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Tagging single-nucleotide polymorphisms in antioxidant defense enzymes and susceptibility to breast cancer.
by Cebrian A, Pharoah PD, Ahmed S, Smith PL, Luccarini C, Luben R, Redman K, Munday H, Easton DF, Dunning AM, Ponder BA.
Affliation: Strangeways Research Laboratory, Cancer Research UK Department of Oncology, University of Cambridge,Worts Causeway, Cambridge CB1 8RN, UK. arancha@srl.cam.ac.uk
Journal: Cancer Res. 66(2):1225-33
Publication Date: Friday, January 20, 2006
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