Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria.
by Boekhorst J, Helmer Q, Kleerebezem M, Siezen RJ.
Affliation: Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen, 6525ED, Nijmegen, The Netherlands.
Journal: Microbiology. 152(Pt 1):273-80
Publication Date: Friday, December 30, 2005
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Estrogen's and Progesterone's Impact on Gene Expression in the Mouse Lacrimal Gland.
by Suzuki T, Schirra F, Richards SM, Treister NS, Lombardi MJ, Rowley P, Jensen RV, Sullivan DA.
Affliation: Schepens Eye Research Institute and.
Journal: Invest Ophthalmol Vis Sci. 47(1):158-68
Publication Date: Friday, December 30, 2005
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EPD in its twentieth year: towards complete promoter coverage of selected model organisms.
by Schmid CD, Perier R, Praz V, Bucher P.
Affliation: Swiss Institute of Bioinformatics Chemin des Boveresses 155, CH-1066 Epalinges, Switzerland.
Journal: Nucleic Acids Res. 34(Database issue):D82-5
Publication Date: Thursday, December 29, 2005
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MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
by Sun H, Palaniswamy SK, Pohar TT, Jin VX, Huang TH, Davuluri RV.
Affliation: Department of Molecular Virology, Immunology and Medical Genetics, Human Cancer Genetics Program, Comprehensive Cancer Center, The Ohio Stage University 420 W 12th Avenue, TMRF 524, Columbus, OH 43210, USA.
Journal: Nucleic Acids Res. 34(Database issue):D98-D103
Publication Date: Thursday, December 29, 2005
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Panzea: a database and resource for molecular and functional diversity in the maize genome.
by Zhao W, Canaran P, Jurkuta R, Fulton T, Glaubitz J, Buckler E, Doebley J, Gaut B, Goodman M, Holland J, Kresovich S, McMullen M, Stein L, Ware D.
Affliation: Cold Spring Harbor Laboratory, Cold Spring Harbor NY 11724, USA.
Journal: Nucleic Acids Res. 34(Database issue):D752-7
Publication Date: Thursday, December 29, 2005
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ODB: a database of operons accumulating known operons across multiple genomes.
by Okuda S, Katayama T, Kawashima S, Goto S, Kanehisa M.
Affliation: Bioinformatics Center, Institute for Chemical Research, Kyoto University Gokasho, Uji, Kyoto 611-0011, Japan.
Journal: Nucleic Acids Res. 34(Database issue):D358-62
Publication Date: Thursday, December 29, 2005
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PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways.
by Maltsev N, Glass E, Sulakhe D, Rodriguez A, Syed MH, Bompada T, Zhang Y, D'Souza M.
Affliation: Mathematics and Computer Science Division, Argonne National Laboratory Argonne, IL 60439, USA.
Journal: Nucleic Acids Res. 34(Database issue):D369-72
Publication Date: Thursday, December 29, 2005
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VIPERdb: a relational database for structural virology.
by Shepherd CM, Borelli IA, Lander G, Natarajan P, Siddavanahalli V, Bajaj C, Johnson JE, Brooks CL, Reddy VS.
Affliation: Department of Molecular Biology, TPC-6 The Scripps Research Institute 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Journal: Nucleic Acids Res. 34(Database issue):D386-9
Publication Date: Thursday, December 29, 2005
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LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria species.
by Dieterich G, Kärst U, Fischer E, Wehland J, Jänsch L.
Affliation: Department for Cell Biology, Research Centre for Biotechnology (GBF) Mascheroder Weg 1, 38124 Braunschweig, Germany.
Journal: Nucleic Acids Res. 34(Database issue):D402-6
Publication Date: Thursday, December 29, 2005
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The LIFEdb database in 2006.
by Mehrle A, Rosenfelder H, Schupp I, Del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S.
Affliation: Division Molecular Genome Analysis, German Cancer Research Center Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany.
Journal: Nucleic Acids Res. 34(Database issue):D415-8
Publication Date: Thursday, December 29, 2005
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CryptoDB: a Cryptosporidium bioinformatics resource update.
by Heiges M, Wang H, Robinson E, Aurrecoechea C, Gao X, Kaluskar N, Rhodes P, Wang S, He CZ, Su Y, Miller J, Kraemer E, Kissinger JC.
Affliation: Center for Tropical and Emerging Global Diseases, University of Georgia Athens, GA, USA.
Journal: Nucleic Acids Res. 34(Database issue):D419-22
Publication Date: Thursday, December 29, 2005
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FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum.
by Güldener U, Mannhaupt G, Münsterkötter M, Haase D, Oesterheld M, Stümpflen V, Mewes HW, Adam G.
Affliation: Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, Technische Universität München D-85350 Freising-Weihenstephan, Germany.
Journal: Nucleic Acids Res. 34(Database issue):D456-8
Publication Date: Thursday, December 29, 2005
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ASD: a bioinformatics resource on alternative splicing.
by Stamm S, Riethoven JJ, Le Texier V, Gopalakrishnan C, Kumanduri V, Tang Y, Barbosa-Morais NL, Thanaraj TA.
Affliation: European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK.
Journal: Nucleic Acids Res. 34(Database issue):D46-55
Publication Date: Thursday, December 29, 2005
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FlyRNAi: the Drosophila RNAi screening center database.
by Flockhart I, Booker M, Kiger A, Boutros M, Armknecht S, Ramadan N, Richardson K, Xu A, Perrimon N, Mathey-Prevot B.
Affliation: Department of Genetics, Harvard Medical School Boston, MA 02115, USA.
Journal: Nucleic Acids Res. 34(Database issue):D489-94
Publication Date: Thursday, December 29, 2005
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MetaCyc: a multiorganism database of metabolic pathways and enzymes.
by Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD.
Affliation: SRI International 333 Ravenswood, Menlo Park, CA 94025, USA.
Journal: Nucleic Acids Res. 34(Database issue):D511-6
Publication Date: Thursday, December 29, 2005
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PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns.
by McLaughlin T, Siepen JA, Selley J, Lynch JA, Lau KW, Yin H, Gaskell SJ, Hubbard SJ.
Affliation: Faculty of Life Sciences, University of Manchester M13 9PT, UK.
Journal: Nucleic Acids Res. 34(Database issue):D649-54
Publication Date: Thursday, December 29, 2005
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DrugBank: a comprehensive resource for in silico drug discovery and exploration.
by Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J.
Affliation: Department of Computing Science and Department of Biological Sciences, University of Alberta Edmonton, AB, Canada T6G 2E8.
Journal: Nucleic Acids Res. 34(Database issue):D668-72
Publication Date: Thursday, December 29, 2005
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SuperNatural: a searchable database of available natural compounds.
by Dunkel M, Fullbeck M, Neumann S, Preissner R.
Affliation: Berlin Center of Genome Based Bioinformatics, 3D Datamining Group, Institute of Biochemistry, Charité-University Medicine Berlin Monbijoustrasse 2, 10117 Berlin, Germany.
Journal: Nucleic Acids Res. 34(Database issue):D678-83
Publication Date: Thursday, December 29, 2005
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LARaLink 2.0: A Comprehensive Aid to Basic and Clinical Cytogenetic Research.
by Platts AE, Moldenhauer JS, Fayz B, Wang D, Borgaonkar DS, Krawetz SA.
Affliation: Bioinformatics, Applied Genomics Technology Center, Wayne State University, Detroit, MI 48201.
Journal: Genet Test. 9(4):334-41
Publication Date: Wednesday, December 28, 2005
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Comparative Genomics and Gene Expression Analysis Identifies BBS9, a New Bardet-Biedl Syndrome Gene.
by Nishimura DY, Swiderski RE, Searby CC, Berg EM, Ferguson AL, Hennekam R, Merin S, Weleber RG, Biesecker LG, Stone EM, Sheffield VC.
Affliation: Department of Pediatrics, University of Iowa, Iowa City, IA, 52242, USA. val-sheffield@uiowa.edu.
Journal: Am J Hum Genet. 77(6):1021-33
Publication Date: Wednesday, December 28, 2005
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