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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - September, 2005

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Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks.
by Sgourakis NG, Bagos PG, Hamodrakas SJ.
Affliation: Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Athens 157 01, Greece.
Journal: Bioinformatics. :
Publication Date: Wednesday, September 21, 2005
PubMed citation

Divergent responses of chondrocytes and endothelial cells to shear stress: Cross-talk among COX-2, the phase 2 response, and apoptosis.
by Healy ZR, Lee NH, Gao X, Goldring MB, Talalay P, Kensler TW, Konstantopoulos K.
Affliation: Department of Chemical and Biomolecular Engineering, The Johns Hopkins University, Baltimore, MD 21218; The Institute for Genomic Research, Rockville, MD 20850.
Journal: Proc Natl Acad Sci U S A. :
Publication Date: Tuesday, September 20, 2005
PubMed citation

Individualized cancer chemotherapy integrating drug sensitivity tests, pathological profile analysis and computational coordination - An effective strategy to improve clinical treatment.
by Lu DY, Chen XL, Ding J.
Affliation: Department of Bioengineering, School of Life Sciences, Shanghai University, 99 Shangda Street, Shanghai 200436, PR China.
Journal: Med Hypotheses. :
Publication Date: Monday, September 19, 2005
PubMed citation

Mapping of a new candidate locus for uromodulin-associated kidney disease (UAKD) to chromosome 1q41.
by Hodanová K, Majewski J, Kublová M, Vyletal P, Kalbácová M, Stiburková B, Hulková H, Chagnon YC, Lanouette CM, Marinaki A, Fryns JP, Venkat-Raman G, Kmoch S.
Affliation: Center for Applied Genomics, Institute for Inherited Metabolic Disorders, Charles University 1st School of Medicine, Prague, Czech Republic.
Journal: Kidney Int. 68(4):1472-82
Publication Date: Friday, September 16, 2005
PubMed citation

5(th) HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK - Setting the Analysis Frame.
by Stephan C, Hamacher M, Blüggel M, Körting G, Chamrad D, Scheer C, Marcus K, Reidegeld KA, Lohaus C, Schäfer H, Martens L, Jones P, Müller M, Auyeung K, Taylor C, Binz PA, Thiele H, Parkinson D, Meyer HE, Apweiler R.
Affliation: Medical Proteom-Center, Ruhr-University Bochum, Bochum, Germany.
Journal: Proteomics. 5(14):3560-3562
Publication Date: Friday, September 16, 2005
PubMed citation

BADASP: predicting functional specificity in protein families using ancestral sequences.
by Edwards RJ, Shields DC.
Affliation: Clinical Pharmacology, The Royal College of Surgeons in Ireland, 123 St Stephen's Green, Dublin 2, Ireland.
Journal: Bioinformatics. :
Publication Date: Wednesday, September 14, 2005
PubMed citation

An ontology for carcinoma classification for clinical bioinformatics.
by Kumar A, Yip YL, Smith B, Marwede D, Novotny D.
Affliation: IFOMIS, University of Saarland, Saarbruecken, Germany.
Journal: Stud Health Technol Inform. 116:635-40
Publication Date: Wednesday, September 14, 2005
PubMed citation

Comparison of lignin deposition in three ectopic lignification mutants.
by Rogers LA, Dubos C, Surman C, Willment J, Cullis IF, Mansfield SD, Campbell MM.
Affliation: Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Journal: New Phytol. 168(1):123-40
Publication Date: Wednesday, September 14, 2005
PubMed citation

Applied proteomics - analyzing protein structure and function for drug discovery.
by O'hanlon K.
Affliation: Current Drugs Ltd, Middlesex House, 34-42 Cleveland Street, London, W1P 6LB, UK. karenoh@cursci.co.uk.
Journal: IDrugs. 2(4):299-300
Publication Date: Tuesday, September 13, 2005
PubMed citation

Statistical signals in bioinformatics.
by Karlin S.
Affliation: Department of Mathematics, Stanford University, Stanford, CA 94305-2125.
Journal: Proc Natl Acad Sci U S A. :
Publication Date: Tuesday, September 13, 2005
PubMed citation

Versatile and declarative dynamic programming using pair algebras.
by Steffen P, Giegerich R.
Affliation:
Journal: BMC Bioinformatics. 6(1):224
Publication Date: Tuesday, September 13, 2005
PubMed citation



Emerging issues of the expression profiling technologies for the study of gynecologic cancer.
by Pappa KI, Anagnou NP.
Affliation: First Department of Obstetrics and Gynecology, Laboratory of Biology; University of Athens School of Medicine, Athens, Greece.
Journal: Am J Obstet Gynecol. 193(3 Suppl):908-18
Publication Date: Tuesday, September 13, 2005
PubMed citation

Genomic approach of AIDS pathogenesis: exhaustive genotyping of the TNFR1 gene in a French AIDS cohort.
by Diop G, Spadoni JL, Do H, Hirtzig T, Coulonges C, Labib T, Issing W, Rappaport J, Therwath A, Lathrop M, Matsuda F, Zagury JF.
Affliation: Équipe génomique, bioinformatique et pathologies du système immunitaire, Inserm EMI0355, 15, rue de l'École-de-Médecine, 75006 Paris, France; Centre national de génotypage, 2, rue Gaston-Crémieux, 91057 Evry cedex, France.
Journal: Biomed Pharmacother. :
Publication Date: Monday, September 12, 2005
PubMed citation

From XML to RDF: how semantic web technologies will change the design of 'omic' standards.
by Wang X, Gorlitsky R, Almeida JS.
Affliation: Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, 135 Cannon St. Suite 303, Charleston, South Carolina 29403-5720, USA.
Journal: Nat Biotechnol. 23(9):1099-103
Publication Date: Friday, September 09, 2005
PubMed citation

Expression, regulation and triglyceride hydrolase activity of adiponutrin family members.
by Lake AC, Sun Y, Li JL, Kim JE, Johnson JW, Li D, Revett T, Shih HH, Liu W, Paulsen JE, Gimeno RE.
Affliation:
Journal: J Lipid Res. :
Publication Date: Friday, September 09, 2005
PubMed citation

Serum butyrylcholinesterase in type 2 diabetes mellitus: a biochemical and bioinformatics approach.
by Gumpeny SR, Gumpeny N, Allam AR, As M, S S, J SR, P V.
Affliation:
Journal: Lipids Health Dis. 4(1):18
Publication Date: Friday, September 09, 2005
PubMed citation

Reconstitution and characterization of aminopyrrolnitrin oxygenase: A Rieske N-oxygenase that catalyzes unusual arylamine oxidation.
by Lee J, Simurdiak M, Zhao H.
Affliation: Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801.
Journal: J Biol Chem. :
Publication Date: Friday, September 09, 2005
PubMed citation

Epitomics: serum screening for the early detection of cancer on microarrays using complex panels of tumor antigens.
by Draghici S, Chatterjee M, Tainsky MA.
Affliation: Karmanos Cancer Institute/Wayne State University, Program in Molecular Biology & Human Genetics, Department of Computer Science, Wayne State University, 5143 Cass Ave., Room 431 State Hall, Detroit, MI 48202, USA. sod@cs.wayne.edu
Journal: Expert Rev Mol Diagn. 5(5):735-43
Publication Date: Friday, September 09, 2005
PubMed citation

SNPs and interaction analyses of myocilin, optineurin, and apolipoprotein E in primary open angle glaucoma patients.
by Fan BJ, Wang DY, Fan DS, Tam PO, Lam DS, Tham CC, Lam CY, Lau TC, Pang CP.
Affliation: Department of Ophthalmology and Visual Sciences, The Chinese University of Hong Kong, Hong Kong, China. bjfan@cuhk.edu.hk
Journal: Mol Vis. 11:625-31
Publication Date: Thursday, September 08, 2005
PubMed citation

Molecular cloning of a novel rat gene Tsarg1, a member of the DnaJ/HSP40 protein family.
by Yang HM, Liu G, Nie ZY, Nie DS, Deng Y, Lu GX.
Affliation:
Journal: DNA Seq. 16(3):166-72
Publication Date: Thursday, September 08, 2005
PubMed citation

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