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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - September, 2005

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Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon.
by Beckers G, Strösser J, Hildebrandt U, Kalinowski J, Farwick M, Krämer R, Burkovski A.
Affliation: Institut für Biochemie der Universität zu Köln, Zülpicher Str. 47, D-50674 Köln, Germany.
Journal: Mol Microbiol. 58(2):580-95
Publication Date: Friday, September 30, 2005
PubMed citation

[The application of surface-enhanced laser desorption/inionation-time of flight-mass spectrometry in diagnosing dysplasia and chronic atrophic gastric-carditis in population with high risk of gastric-cardia adenocarcinoma.]
by Wang DC, Wang LD, Zheng S, Fan ZM, Li JL, Feng CW, Zhang YR, Liu B, Gao SS, He X.
Affliation: Laboratory for Cancer Research, College of Medicine, Zhengzhou University, Henan Key Laboratory for Esophageal Cancer, Zhengzhou 450052, China. Email: ldwang@zzu.edu.cn.
Journal: Zhonghua Nei Ke Za Zhi. 44(8):573-6
Publication Date: Friday, September 30, 2005
PubMed citation

Fractionation and identification of proteins by 2-DE and MS: towards a proteomic analysis of Plasmodium falciparum.
by Gelhaus C, Fritsch J, Krause E, Leippe M.
Affliation: Research Center for Infectious Diseases of the University of Würzburg, Würzburg, Germany.
Journal: Proteomics. :
Publication Date: Friday, September 30, 2005
PubMed citation

Automatic ultrastructure segmentation of reconstructed cryoEM maps of icosahedral viruses.
by Yu Z, Bajaj C.
Affliation: Computational Visualization Center, Department of Computer Sciences, The University of Texas at Austin, Austin, TX 78712, USA. zeyun.yu@gmail.com
Journal: IEEE Trans Image Process. 14(9):1324-37
Publication Date: Thursday, September 29, 2005
PubMed citation

Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy.
by Balduin M, Sierra S, Däumer MP, Rockstroh JK, Oette M, Fätkenheuer G, Kupfer B, Beerenwinkel N, Hoffmann D, Selbig J, Pfister HJ, Kaiser R.
Affliation: Institute of Virology, University of Cologne, Fuerst-Pueckler Str. 56, D-50935 Cologne, Germany.
Journal: J Clin Virol. :
Publication Date: Thursday, September 29, 2005
PubMed citation

Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family.
by Rautengarten C, Steinhauser D, Büssis D, Stintzi A, Schaller A, Kopka J, Altmann T.
Affliation: Institut für Biochemie und Biologie, Genetik, Universität Potsdam, Golm, Germany.
Journal: PLoS Comput Biol. 1(4):e40
Publication Date: Thursday, September 29, 2005
PubMed citation

Serological identification and bioinformatics analysis of immunogenic antigens in multiple myeloma.
by Zhou FL, Zhang WG, Chen G, Zhao WH, Cao XM, Chen YX, Tian W, Liu J, Liu SH.
Affliation: Department of Hematology, The Second Hospital, School of Medicine, Xi’an Jiaotong University, The west five road, No. 157, Xi’an, 710004, China.
Journal: Cancer Immunol Immunother. :1-8
Publication Date: Thursday, September 29, 2005
PubMed citation

Bioinformatics analyses of circular dichroism protein reference databases.
by Janes RW.
Affliation: School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, E1 4NS, UK.
Journal: Bioinformatics. :
Publication Date: Wednesday, September 28, 2005
PubMed citation

Profile based direct kernels for remote homology detection and fold recognition.
by Rangwala H, Karypis G.
Affliation: Department of Computer Science & Engineering, University of Minnesota, Minneapolis, MN 55455.
Journal: Bioinformatics. :
Publication Date: Wednesday, September 28, 2005
PubMed citation

Genetic and physical mapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1.
by Chen S, Wang L, Que Z, Pan R, Pan Q.
Affliation: Laboratory of Plant Resistance and Genetics, College of Resources and Environmental Sciences, South China Agricultural University, Guangzhou, 510642, China, panqh@scau.edu.cn.
Journal: Theor Appl Genet. :1-8
Publication Date: Wednesday, September 28, 2005
PubMed citation

Toxoplasma gondii: Identification of a putative nitric oxide synthase motif DNA sequence.
by Gutierrez Escobar AJ, Gómez-Marin JE.
Affliation: Grupo de Estudio en Parasitología Molecular (GEPAMOL), Centro de Investigaciones Biomédicas, Facultad de Ciencias de la Salud, Universidad del Quindio, Armenia, Colombia.
Journal: Exp Parasitol. :
Publication Date: Wednesday, September 28, 2005
PubMed citation



On construction of stochastic genetic networks based on gene expression sequences.
by Ching WK, Ng MM, Fung ES, Akutsu T.
Affliation: Department of Mathematics, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong, China. wkc@maths.hku.hk.
Journal: Int J Neural Syst. 15(4):297-310
Publication Date: Tuesday, September 27, 2005
PubMed citation

Renewed interest in cancer immunotherapy with the tumor necrosis factor superfamily molecules.
by Tamada K, Chen L.
Affliation: Department of Dermatology and Oncology, The Institute for Cell Engineering, Johns Hopkins University School of Medicine, 600 North, Wolfe Street, Jefferson Building Rm 1-121, Baltimore, MD, 21287, USA, ktamada1@jhmi.edu.
Journal: Cancer Immunol Immunother. :1-8
Publication Date: Tuesday, September 27, 2005
PubMed citation

POEM: Parameter Optimization Using Ensemble Methods: Application to Target Specific Scoring Functions.
by Antes I, Merkwirth C, Lengauer T.
Affliation: Max-Planck-Institut für Informatik, Stuhlsatzenhausweg 85, D-66123 Saarbrücken, Germany.
Journal: J Chem Inf Model. 2005 Sep-Oct;45(5):1291-302
Publication Date: Monday, September 26, 2005
PubMed citation

A screen for conserved sequences with biased base composition identifies noncoding RNAs in the A-T rich genome of Plasmodium falciparum.
by Upadhyay R, Bawankar P, Malhotra D, Patankar S.
Affliation: School of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.
Journal: Mol Biochem Parasitol. :
Publication Date: Monday, September 26, 2005
PubMed citation

The Trypanosoma brucei signal recognition particle lacks the Alu-domain-binding proteins: purification and functional analysis of its binding proteins by RNAi.
by Lustig Y, Goldshmidt H, Uliel S, Michaeli S.
Affliation: Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan 52900, Israel.
Journal: J Cell Sci. 118(Pt 19):4551-62
Publication Date: Friday, September 23, 2005
PubMed citation

EXPANDER - an integrative program suite for microarray data analysis.
by Shamir R, Maron-Katz A, Tanay A, Linhart C, Steinfeld I, Sharan R, Shiloh Y, Elkon R.
Affliation:
Journal: BMC Bioinformatics. 6(1):232
Publication Date: Thursday, September 22, 2005
PubMed citation

Antiviral RNAi therapy: emerging approaches for hitting a moving target.
by Leonard JN, Schaffer DV.
Affliation: 1Department of Chemical Engineering and the Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA.
Journal: Gene Ther. :
Publication Date: Thursday, September 22, 2005
PubMed citation

Computational biology for visualization of brain structure.
by Toga AW.
Affliation: Department of Neurology, UCLA School of Medicine, Laboratory of Neuro Imaging, Reed Neurological Research Center, Room 4238, 710 Westwood Plaza, Los Angeles, CA, 90095-1769, USA, toga@loni.ucla.edu.
Journal: Anat Embryol (Berl). :1-6
Publication Date: Thursday, September 22, 2005
PubMed citation

[Screening and cloning target genes transactivated by hepatitis C virus F protein using suppression subtractive hybridization technique.]
by Guo J, Cheng J, Ji D, Zhao LF, Gao XS, Liu Y, Wu SH.
Affliation: *Institute of Infectious Diseases, Ditan Hospital, Beijing 100011, China.
Journal: Zhonghua Gan Zang Bing Za Zhi. 13(9):660-3
Publication Date: Wednesday, September 21, 2005
PubMed citation

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Last Updated: 5 August 2006.