Development and testing of an automated approach to protein docking.
by Tovchigrechko A, Vakser IA.
Affliation: Bioinformatics Laboratory, Department of Applied Mathematics and Statistics, State University of New York at Stony Brook, Stony Brook, New York, USA.
Journal: Proteins. 60(2):296-301
Publication Date: Thursday, June 30, 2005
PubMed citation
|
Geometry-based flexible and symmetric protein docking.
by Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ.
Affliation: School of Computer Science, Beverly and Raymond Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel.
Journal: Proteins. 60(2):224-31
Publication Date: Thursday, June 30, 2005
PubMed citation
|
A new era in computational neuroscience.
by Blackwell KT.
Affliation: School of Computational Sciences, and the Krasnow Institute of Advanced Studies, Rockfish Creek Lane, MS 2A1 George Mason University, Fairfax, VA 22030.
Journal: Neuroinformatics. 3(2):163-6
Publication Date: Thursday, June 30, 2005
PubMed citation
|
Regulation of mouse hepatic genes in response to diet induced obesity, insulin resistance and fasting induced weight reduction.
by Raab RM, Bullen J, Kelleher J, Mantzoros C, Stephanopoulos G.
Affliation:
Journal: Nutr Metab (Lond). 2(1):15
Publication Date: Wednesday, June 29, 2005
PubMed citation
|
Cloning and characterization of cDNAs encoding putative CTCFs in the mosquitoes, Aedes aegypti and Anopheles gambiae.
by Gray CE, Coates CJ.
Affliation:
Journal: BMC Mol Biol. 6(1):16
Publication Date: Wednesday, June 29, 2005
PubMed citation
|
Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences.
by Bhasin M, Raghava GP.
Affliation: Institute of Microbial Technology, Sector 39-A, Chandigarh, 160036, India.
Journal: Nucleic Acids Res. 33(Web Server issue):W202-7
Publication Date: Wednesday, June 29, 2005
PubMed citation
|
TMB-Hunt: a web server to screen sequence sets for transmembrane {beta}-barrel proteins.
by Garrow AG, Agnew A, Westhead DR.
Affliation: School of Biochemistry and Microbiology, University of Leeds Leeds LS2 9JT, UK.
Journal: Nucleic Acids Res. 33(Web Server issue):W188-92
Publication Date: Monday, June 27, 2005
PubMed citation
|
GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences.
by Backes C, Kuentzer J, Lenhof HP, Comtesse N, Meese E.
Affliation: Department of Human Genetics Building 60 Medical School, University of Saarland 66421 Homburg/Saar, Germany.
Journal: Nucleic Acids Res. 33(Web Server issue):W208-13
Publication Date: Monday, June 27, 2005
PubMed citation
|
SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites.
by Kamra P, Gokhale RS, Mohanty D.
Affliation: National Institute of Immunology, Aruna Asaf Ali Marg New Delhi 110067, India.
Journal: Nucleic Acids Res. 33(Web Server issue):W220-5
Publication Date: Monday, June 27, 2005
PubMed citation
|
SOAP-based services provided by the European Bioinformatics Institute.
by Pillai S, Silventoinen V, Kallio K, Senger M, Sobhany S, Tate J, Velankar S, Golovin A, Henrick K, Rice P, Stoehr P, Lopez R.
Affliation: European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Journal: Nucleic Acids Res. 33(Web Server issue):W25-8
Publication Date: Monday, June 27, 2005
PubMed citation
|
The bioinformatics links directory: a compilation of molecular biology web servers.
by Fox JA, Butland SL, McMillan S, Campbell G, Ouellette BF.
Affliation: UBC Bioinformatics Centre, University of British Columbia 2185 East Mall, Vancouver, BC, Canada V6T 1Z4.
Journal: Nucleic Acids Res. 33(Web Server issue):W3-W24
Publication Date: Monday, June 27, 2005
PubMed citation
|
BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.
by McDermott J, Guerquin M, Frazier Z, Chang AN, Samudrala R.
Affliation: Department of Microbiology, University of Washington Seattle, WA, USA.
Journal: Nucleic Acids Res. 33(Web Server issue):W324-5
Publication Date: Monday, June 27, 2005
PubMed citation
|
Protein structure prediction servers at University College London.
by Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS, Jones DT.
Affliation: Department of Computer Science, University College London Gower Street, London WC1E 6BT, UK.
Journal: Nucleic Acids Res. 33(Web Server issue):W36-8
Publication Date: Monday, June 27, 2005
PubMed citation
|
TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.
by Aerts S, Van Loo P, Thijs G, Mayer H, de Martin R, Moreau Y, De Moor B.
Affliation: Laboratory of Neurogenetics, Department of Human Genetics, Flanders Interuniversity Institute for Biotechnology and K.U.Leuven Belgium.
Journal: Nucleic Acids Res. 33(Web Server issue):W393-6
Publication Date: Monday, June 27, 2005
PubMed citation
|
RPBS: a web resource for structural bioinformatics.
by Alland C, Moreews F, Boens D, Carpentier M, Chiusa S, Lonquety M, Renault N, Wong Y, Cantalloube H, Chomilier J, Hochez J, Pothier J, Villoutreix BO, Zagury JF, Tufféry P.
Affliation: EBGM, INSERM U726, Université Paris 7 France.
Journal: Nucleic Acids Res. 33(Web Server issue):W44-9
Publication Date: Monday, June 27, 2005
PubMed citation
|
Integrating protein annotation resources through the Distributed Annotation System.
by Olason PI.
Affliation: Center for Biological Sequence Analysis BioCentrum-DTU Building 208 Technical University of Denmark DK-2800 Lyngby, Denmark.
Journal: Nucleic Acids Res. 33(Web Server issue):W468-70
Publication Date: Monday, June 27, 2005
PubMed citation
|
Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.
by Pöhler D, Werner N, Steinkamp R, Morgenstern B.
Affliation: Institute of Microbiology and Genetics, University of Göttingen Goldschmidtstr. 1, 37077 Göttingen, Germany.
Journal: Nucleic Acids Res. 33(Web Server issue):W532-4
Publication Date: Monday, June 27, 2005
PubMed citation
|
PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology.
by Sæbø PE, Andersen SM, Myrseth J, Laerdahl JK, Rognes T.
Affliation: Centre for Molecular Biology and Neuroscience, Institute of Medical Microbiology, University of Oslo and Rikshospitalet-Radiumhospitalet HF NO-0027 Oslo, Norway.
Journal: Nucleic Acids Res. 33(Web Server Issue):W535-W539
Publication Date: Monday, June 27, 2005
PubMed citation
|
FeatureExtract--extraction of sequence annotation made easy.
by Wernersson R.
Affliation: Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark Building 208, DK-2800 Lyngby, Denmark.
Journal: Nucleic Acids Res. 33(Web Server issue):W567-9
Publication Date: Monday, June 27, 2005
PubMed citation
|
RACE: Remote Analysis Computation for gene Expression data.
by Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.
Affliation: DNA Array Facility, Center for Integrative Genomics, University of Lausanne Lausanne, Switzerland.
Journal: Nucleic Acids Res. 33(Web Server issue):W638-43
Publication Date: Monday, June 27, 2005
PubMed citation
|
|
|
|