PieceMaker: selection of DNA fragments for selector-guided multiplex amplification.
by Stenberg J, Dahl F, Landegren U, Nilsson M.
Affliation: Department of Genetics and Pathology, Rudbeck Laboratory Se-751 85, Uppsala, Sweden.
Journal: Nucleic Acids Res. 33(8):e72
Publication Date: Friday, April 29, 2005
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SSEP-2.0: Secondary Structural Elements of Proteins.
by Balamurugan B, Samaya Mohan K, Ramesh J, Roshan MN, Sumathi K, Sekar K.
Affliation: Bioinformatics Centre, Indian Institute of Science, Bangalore 560 012, India.
Journal: Acta Crystallogr D Biol Crystallogr. 61(Pt 5):634-6
Publication Date: Thursday, April 28, 2005
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Parameter-space screening: a powerful tool for high-throughput crystal structure determination.
by Liu ZJ, Lin D, Tempel W, Praissman JL, Rose JP, Wang BC.
Affliation: Southeast Collaboratory for Structural Genomics, Department of Biochemistry and Molecular Biology, The University of Georgia, Athens, Georgia, USA.
Journal: Acta Crystallogr D Biol Crystallogr. 61(Pt 5):520-527
Publication Date: Thursday, April 28, 2005
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Automated alignment and pattern recognition of single-molecule force spectroscopy data.
by Kuhn M, Janovjak H, Hubain M, Müller DJ.
Affliation: California Institute of Technology, Division of Computer Science, Pasadena, California , 91125, USA.
Journal: J Microsc. 218(Pt 2):125-32
Publication Date: Thursday, April 28, 2005
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Robust estimation of protein expression ratios with lysate microarray technology.
by Mircean C, Shmulevich I, Cogdell D, Choi W, Jia Y, Tabus I, Hamilton SR, Zhang W.
Affliation: Department of Pathology, University of Texas M.D. Anderson Cancer Center Houston, TX, USA.
Journal: Bioinformatics. 21(9):1935-42
Publication Date: Wednesday, April 27, 2005
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Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities.
by Imielinski M, Belta C, Halász A, Rubin H.
Affliation: Genomics and Computational Biology Graduate Group, University of Pennsylvania School of Medicine Philadelphia, PA, 19104, USA.
Journal: Bioinformatics. 21(9):2008-16
Publication Date: Wednesday, April 27, 2005
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Support vector machines for prediction and analysis of Beta and gamma-turns in proteins.
by Pham TH, Satou K, Ho TB.
Affliation: Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292, Japan. h-pham@jaist.ac.jp.
Journal: J Bioinform Comput Biol. 3(2):343-58
Publication Date: Tuesday, April 26, 2005
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Identification of a novel cell-cycle-induced MCM family protein MCM9.
by Yoshida K.
Affliation: Department of Life Sciences, Meiji University, Kanagawa 214-8571, Japan.
Journal: Biochem Biophys Res Commun. 331(2):669-74
Publication Date: Tuesday, April 26, 2005
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Identification of global gene expression differences between human lens epithelial and cortical fiber cells reveals specific genes and their associated pathways important for specialized lens cell functions.
by Hawse JR, DeAmicis-Tress C, Cowell TL, Kantorow M.
Affliation: Department of Biomedical Science, Florida Atlantic University, Boca Raton, FL, USA. hawse.john@mayo.edu
Journal: Mol Vis. 11:274-83
Publication Date: Tuesday, April 26, 2005
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Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites.
by Gershenzon NI, Stormo GD, Ioshikhes IP.
Affliation: Department of Biomedical Informatics, The Ohio State University 3184 Graves Hall, 333 W. 10th Avenue, Columbus, OH 43210, USA. gershenzon-1@medctr.osu.edu
Journal: Nucleic Acids Res. 33(7):2290-301
Publication Date: Monday, April 25, 2005
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TM-align: a protein structure alignment algorithm based on the TM-score.
by Zhang Y, Skolnick J.
Affliation: Center of Excellence in Bioinformatics, University at Buffalo 901 Washington Street, Buffalo, NY 14203, USA.
Journal: Nucleic Acids Res. 33(7):2302-9
Publication Date: Monday, April 25, 2005
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Linear indices of the 'macromolecular graph's nucleotides adjacency matrix' as a promising approach for bioinformatics studies. Part 1: Prediction of paromomycin's affinity constant with HIV-1 Psi-RNA packaging region.
by Marrero Ponce Y, Castillo Garit JA, Nodarse D.
Affliation: Department of Pharmacy, Faculty of Chemical-Pharmacy and Department of Drug Design, Chemical Bioactive Center, Central University of Las Villas, Santa Clara 54830, Villa Clara, Cuba.
Journal: Bioorg Med Chem. 13(10):3397-404
Publication Date: Monday, April 25, 2005
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A theoretical model of restriction endonuclease NlaIV in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis and circular dichroism spectroscopy.
by Chmiel AA, Radlinska M, Pawlak SD, Krowarsch D, Bujnicki JM, Skowronek KJ.
Affliation: Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. ks. Trojdena 4, 02-109 Warsaw, Poland.
Journal: Protein Eng Des Sel. :
Publication Date: Monday, April 25, 2005
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A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models.
by Sgourakis NG, Bagos PG, Papasaikas PK, Hamodrakas SJ.
Affliation:
Journal: BMC Bioinformatics. 6(1):104
Publication Date: Monday, April 25, 2005
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Comparative metagenomics of microbial communities.
by Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM.
Affliation: Department of Energy (DOE) Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.
Journal: Science. 308(5721):554-7
Publication Date: Friday, April 22, 2005
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p53 Gain-of-Function: Tumor Biology and Bioinformatics Come Together.
by Koonin EV, Rogozin IB, Glazko GV.
Affliation: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Journal: Cell Cycle. 4(5):
Publication Date: Friday, April 22, 2005
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Transcripts from a human primordial follicle cDNA library.
by Serafica MD, Goto T, Trounson AO.
Affliation: MISCL (Monash Immunology and Stem Cell Laboratories), Monash University, Wellington Road, Clayton, Victoria, 3800 Australia.
Journal: Hum Reprod. :
Publication Date: Friday, April 22, 2005
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Gene expression arrays in cancer research: methods and applications.
by Brentani RR, Carraro DM, Verjovski-Almeida S, Reis EM, Neves EJ, de Souza SJ, Carvalho AF, Brentani H, Reis LF.
Affliation: Ludwig Institute for Cancer Research, São Paulo, Brazil; Hospital do Câncer A.C. Camargo, São Paulo, Brazil.
Journal: Crit Rev Oncol Hematol. 54(2):95-105
Publication Date: Thursday, April 21, 2005
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Functionally distinct polymorphic sequences in the human genome that are targets for p53 transactivation.
by Tomso DJ, Inga A, Menendez D, Pittman GS, Campbell MR, Storici F, Bell DA, Resnick MA.
Affliation: Laboratory of Molecular Genetics, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC 27709.
Journal: Proc Natl Acad Sci U S A. :
Publication Date: Thursday, April 21, 2005
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SNPLINK: multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal.
by Webb EL, Sellick GS, Houlston RS.
Affliation: Section of Cancer Genetics, Institute of Cancer Research, 15 Cotswold Road, Sutton, Surrey, SM2 5NG, UK.
Journal: Bioinformatics. :
Publication Date: Wednesday, April 20, 2005
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