IL-2- and STAT5-regulated cytokine gene expression in cells expressing the Tax protein of HTLV-1.
by Fung MM, Chu YL, Fink JL, Wallace A, McGuire KL.
Affliation: 1Department of Biology, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182-4614 USA.
Journal: Oncogene. :
Publication Date: Monday, February 28, 2005
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LARALink: a web application for cytogenetic linkage analysis.
by Fayz B, Moldenhauer J, Wang D, Zhao C, Yao B, Liu D, Weinsheimer S, Gardner L, Johnson A, Womble D, Krawetz S.
Affliation: Bioinformatics Facility, University of Pennsylvania, Philadelphia, PA, USA.
Journal: Clin Genet. 67(4):314-21
Publication Date: Monday, February 28, 2005
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PLATCOM: a Platform for Computational Comparative Genomics.
by Choi K, Ma Y, Choi JH, Kim S.
Affliation: School of Informatics, Indiana University - Bloomington, IN 47404, USA.
Journal: Bioinformatics. :
Publication Date: Friday, February 25, 2005
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MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations.
by Ding J, Berleant D.
Affliation: Department of Electrical and Computer Engineering, Iowa State University Ames, IA 50011, USA.
Journal: Bioinformatics. 21(5):694-5
Publication Date: Friday, February 25, 2005
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The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans.
by Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, Vamathevan J, Miranda M, Anderson IJ, Fraser JA, Allen JE, Bosdet IE, Brent MR, Chiu R, Doering TL, Donlin MJ, D'Souza CA, Fox DS, Grinberg V, Fu J, Fukushima M, Haas BJ, Huang JC, Janbon G, Jones SJ, Koo HL, Krzywinski MI, Kwon-Chung JK, Lengeler KB, Maiti R, Marra MA, Marra RE, Mathewson CA, Mitchell TG, Pertea M, Riggs FR, Salzberg SL, Schein JE, Shvartsbeyn A, Shin H, Shumway M, Specht CA, Suh BB, Tenney A, Utterback TR, Wickes BL
Affliation: Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA. bjloftus@tigr.org
Journal: Science. 307(5713):1321-4
Publication Date: Friday, February 25, 2005
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Ontological visualization of protein-protein interactions.
by Drabkin HJ, Hollenbeck C, Hill DP, Blake JA.
Affliation: Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, USA. hjd@informatics.jax.org.
Journal: BMC Bioinformatics. 6(1):29
Publication Date: Friday, February 25, 2005
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Relational patterns of gene expression via nonmetric multidimensional scaling analysis.
by Taguchi YH, Oono Y.
Affliation: Department of Physics, Faculty of Science and Technology, Chuo University, 1-13-27 Kasuga, Bunkyo-ku, Tokyo 112-8551, Japan; Institute for Science and Technology, Chuo University, 1-13-27 Kasuga, Bunkyo-ku, Tokyo 112-8551, Japan.
Journal: Bioinformatics. :
Publication Date: Thursday, February 24, 2005
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Prediction of nuclear hormone receptor response elements.
by Sandelin A, Wasserman WW.
Affliation: Centre for Molecular Medicine and Therapeutics, 3018-950 West 28th Avenue, Vancouver, British Columbia, Canada V5Z 4H4. wyeth@cmmt.ubc.ca.
Journal: Mol Endocrinol. 19(3):595-606
Publication Date: Thursday, February 24, 2005
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Selective integration of multiple biological data for supervised network inference.
by Kato T, Tsuda K, Asai K.
Affliation: Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST), 2-43 Aomi Koto-ku, Tokyo, Japan.
Journal: Bioinformatics. :
Publication Date: Thursday, February 24, 2005
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PatGen - a consolidated resource for searching genetic patent sequences.
by Rouse RJ, Castagnetto J, Niedner RH.
Affliation: Patent Informatics, La Jolla, CA, USA.
Journal: Bioinformatics. :
Publication Date: Thursday, February 24, 2005
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Crystal structure of CC3(TIP30): Implications for its role as a tumor suppressor.
by El Omari K, Bird LE, Nichols CE, Ren J, Stammers DK.
Affliation: Structural Biology Division, University of Oxford, Oxford, OXON OX3 7BN.
Journal: J Biol Chem. :
Publication Date: Thursday, February 24, 2005
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Deleted in Polyposis 1-like 1 Gene (Dp1l1): A Novel Gene Richly Expressed in Retinal Ganglion Cells.
by Sato H, Tomita H, Nakazawa T, Wakana S, Tamai M.
Affliation: Department of Ophthalmology, Tohoku University Graduate School of Medicine, Sendai, Japan.
Journal: Invest Ophthalmol Vis Sci. 46(3):791-6
Publication Date: Thursday, February 24, 2005
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Functional cartography of complex metabolic networks.
by Guimer R, Nunes Amaral LA.
Affliation: NICO and Department of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois 60208, USA.
Journal: Nature. 433(7028):895-900
Publication Date: Thursday, February 24, 2005
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The mitochondrial rhomboid protease PSARL is a new candidate gene for type 2 diabetes.
by Walder K, Kerr-Bayles L, Civitarese A, Jowett J, Curran J, Elliott K, Trevaskis J, Bishara N, Zimmet P, Mandarino L, Ravussin E, Blangero J, Kissebah A, Collier GR.
Affliation: Metabolic Research Unit, School of Health Sciences, Deakin University, Pigdons Road, Waurn Ponds, 3217, Australia.
Journal: Diabetologia. :
Publication Date: Thursday, February 24, 2005
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GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA.
by Beiko RG, Charlebois RL.
Affliation:
Journal: BMC Bioinformatics. 6(1):36
Publication Date: Wednesday, February 23, 2005
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The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements.
by Copeland CS, Mann VH, Morales ME, Kalinna BH, Brindley PJ.
Affliation:
Journal: BMC Evol Biol. 5(1):20
Publication Date: Wednesday, February 23, 2005
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Evolution of transcription factor DNA binding sites.
by Kotelnikova EA, Makeev VJ, Gelfand MS.
Affliation: State Research Institute of Genetics and Selection of Industrial Microorganisms, 1st Dorozhnyj proezd, 1, Moscow, 113535 Russia.
Journal: Gene. :
Publication Date: Wednesday, February 23, 2005
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That the LHbeta gene of several mammals embeds a carboxy terminal peptide-(CTP) like sequence reveals a critical role for mucin oligosaccharides in the evolution of lutropin to chorionic gonadotropin in the animal phyla.
by Nakav S, Jablonka-Shariff A, Kaner S, Chadna-Mohanty P, Grotjan HE, Ben-Menahem D.
Affliation: Department of Clinical Pharmacology, Ben-Gurion University of the Negev, Beer-Sheva 84105.
Journal: J Biol Chem. :
Publication Date: Tuesday, February 22, 2005
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Atlas - a data warehouse for integrative bioinformatics.
by Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.
Affliation:
Journal: BMC Bioinformatics. 6(1):34
Publication Date: Tuesday, February 22, 2005
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CD4(+) T cell immunity against the human papillomavirus-18 E6 transforming protein in healthy donors: identification of promiscuous naturally processed epitopes.
by Facchinetti V, Seresini S, Longhi R, Garavaglia C, Casorati G, Protti MP.
Affliation: Laboratory of Tumor Immunology, DIBIT, Scientific Institute H. San Raffaele, Milan, Italy.
Journal: Eur J Immunol. 35(3):806-815
Publication Date: Tuesday, February 22, 2005
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