Relative importance of secondary structure and solvent accessibility to the stability of protein mutants. A case study with amino acid properties and energetics on T4 and human lysozymes.
by Saraboji K, Gromiha MM, Ponnuswamy MN.
Affliation: Department of Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600025, India.
Journal: Comput Biol Chem. 29(1):25-35
Publication Date: Monday, January 31, 2005
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Update in bioinformatics Toward a digital database of plant cell signalling networks: advantages, limitations and predictive aspects of the digital model.
by Treviño Santa Cruz MB, Genoud D, Métraux JP, Genoud T.
Affliation: Department of Biology, University of Fribourg, Rte Albert Gockel 3, 1700 Fribourg, Switzerland.
Journal: Phytochemistry. 66(3):267-76
Publication Date: Monday, January 31, 2005
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Genomic and Bioinformatics Analysis of HAdV-4, a Human Adenovirus Causing Acute Respiratory Disease: Implications for Gene Therapy and Vaccine Vector Development.
by Purkayastha A, Ditty SE, Su J, McGraw J, Hadfield TL, Tibbetts C, Seto D.
Affliation: School of Computational Sciences, George Mason University, 10900 University Blvd., MSN 5B3, Manassas, VA 20110. dseto@gmu.edu.
Journal: J Virol. 79(4):2559-72
Publication Date: Monday, January 31, 2005
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Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.
by Morris JS, Coombes KR, Koomen J, Baggerly KA, Kobayashi R.
Affliation: Department of Biostatistics and Applied Mathematics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Journal: Bioinformatics. :
Publication Date: Thursday, January 27, 2005
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A statistical analysis of RNA folding algorithms through thermodynamic parameter perturbation.
by Layton DM, Bundschuh R.
Affliation: Department of Physics, The Ohio State University 174 W 18th Avenue, Columbus, OH 43210-1106, USA. dlayton2@uiuc.edu
Journal: Nucleic Acids Res. 33(2):519-24
Publication Date: Thursday, January 27, 2005
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Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential.
by Liu Z, Mao F, Guo JT, Yan B, Wang P, Qu Y, Xu Y.
Affliation: Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Georgia Athens, GA 30602, USA.
Journal: Nucleic Acids Res. 33(2):546-58
Publication Date: Thursday, January 27, 2005
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Metabolomics applications of FT-ICR mass spectrometry.
by Brown SC, Kruppa G, Dasseux JL.
Affliation: Esperion Therapeutics, Inc., Ann Arbor, Michigan 48108, USA. sbrown@esperion.com
Journal: Mass Spectrom Rev. 2005 Mar-Apr;24(2):223-31
Publication Date: Wednesday, January 26, 2005
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Tracker: continuous HMMER and BLAST searching.
by Marchin M, Kelly PT, Fang J.
Affliation: Department of Molecular Biosciences, University of Kansas Lawrence, KS 66045, USA.
Journal: Bioinformatics. 21(3):388-9
Publication Date: Wednesday, January 26, 2005
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Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination.
by Etherington GJ, Dicks J, Roberts IN.
Affliation: Department of Food Safety Science, Institute of Food Research Norwich Research Park, Colney Lane, Norwich NR4 7HA, UK.
Journal: Bioinformatics. 21(3):278-81
Publication Date: Wednesday, January 26, 2005
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A homology model of restriction endonuclease SfiI in complex with DNA.
by Chmiel AA, Bujnicki JM, Skowronek KJ.
Affliation:
Journal: BMC Struct Biol. 5(1):2
Publication Date: Tuesday, January 25, 2005
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Genomic and bioinformatics analysis of HAdV-7, a human adenovirus of species B1 that causes acute respiratory disease: implications for vector development in human gene therapy.
by Purkayastha A, Su J, Carlisle S, Tibbetts C, Seto D.
Affliation: Bioinformatics and Computational Biology, School of Computational Sciences, George Mason University, 10900 University Boulevard, MSN 5B3, Manassas, VA 20110, USA.
Journal: Virology. 332(1):114-29
Publication Date: Friday, January 21, 2005
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RNAi as a tool to study cell biology: building the genome-phenome bridge.
by Gunsalus KC, Piano F.
Affliation: Center for Comparative Functional Genomics, Department of Biology, New York University, 1009 Silver Center, 100 Washington Sq E, New York, New York, 10003 USA.
Journal: Curr Opin Cell Biol. 17(1):3-8
Publication Date: Friday, January 21, 2005
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Sequence Turnover and Tandem Repeats in cis-Regulatory Modules in Drosophila.
by Sinha S, Siggia ED.
Affliation: Center for Studies in Physics and Biology, The Rockefeller University, 1230 York Ave, New York, NY 10021, U.S.A. Phone : 212-327-8835 Fax : 212-327-8544.
Journal: Mol Biol Evol. :
Publication Date: Thursday, January 20, 2005
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EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology.
by Reche PA, Zhang H, Glutting JP, Reinherz EL.
Affliation: Laboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Department of Medicine, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.
Journal: Bioinformatics. :
Publication Date: Wednesday, January 19, 2005
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A mathematical model for the branched chain amino acid biosynthetic pathways of Escherichia coli K12.
by Yang CR, Shapiro BE, Hung SP, Mjolsness ED, Hatfield GW.
Affliation: Microbiology and Molecular Genetics, University of California, Irvine,, CA 92697-4025.
Journal: J Biol Chem. :
Publication Date: Wednesday, January 19, 2005
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Proteomics analysis of human cerebrospinal fluid.
by Yuan X, Desiderio DM.
Affliation: Charles B. Stout Neuroscience Mass Spectrometry Laboratory, University of Tennessee Health Science Center, 847 Monroe Avenue, Room 117, Memphis, TN 38163, USA.
Journal: J Chromatogr B Analyt Technol Biomed Life Sci. 815(1-2):179-89
Publication Date: Monday, January 17, 2005
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Proteomics of Halophilic archaea.
by Joo WA, Kim CW.
Affliation: Graduate School of Life Sciences and Biotechnology, Korea University, 1, 5-ga, Anam-dong, Sungbuk-gu, Seoul 136-701, South Korea.
Journal: J Chromatogr B Analyt Technol Biomed Life Sci. 815(1-2):237-50
Publication Date: Monday, January 17, 2005
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Detection and characterization of horizontal transfers in prokaryotes using genomic signature.
by Dufraigne C, Fertil B, Lespinats S, Giron A, Deschavanne P.
Affliation: INSERM U 494, 91 bd de l'Hôpital 75013 Paris, France.
Journal: Nucleic Acids Res. 33(1):e6
Publication Date: Monday, January 17, 2005
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Biosynthesis of lysine in plants: evidence for a variant of the known bacterial pathways.
by Hudson AO, Bless C, Macedo P, Chatterjee SP, Singh BK, Gilvarg C, Leustek T.
Affliation: Biotech Center and Department of Plant Biology and Pathology, Rutgers University, 59 Dudley Road, New Brunswick, NJ 08901-8520, United States.
Journal: Biochim Biophys Acta. 1721(1-3):27-36
Publication Date: Monday, January 17, 2005
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Semen-specific genetic characteristics of human immunodeficiency virus type 1 env.
by Pillai SK, Good B, Pond SK, Wong JK, Strain MC, Richman DD, Smith DM.
Affliation: University of California, San Diego, Division of Biological Sciences, 9500 Gilman Dr., MC 0679, La Jolla, CA 92093, USA. satish@ucsd.edu
Journal: J Virol. 79(3):1734-42
Publication Date: Friday, January 14, 2005
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