Dynamics of cellular level function and regulation derived from murine expression array data.
by de Bivort B, Huang S, Bar-Yam Y.
Affliation: Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138; Vascular Biology Program, Departments of Pathology and Surgery, Children's Hospital and Harvard Medical School, Boston, MA 02115.
Journal: Proc Natl Acad Sci U S A. :
Publication Date: Wednesday, December 15, 2004
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Implicit motif distribution based hybrid computational kernel for sequence classification.
by Atalay V, Cetin-Atalay R.
Affliation: Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University Blacksburg, VA 24061, USA; Department of Computer Engineering, Middle East Technical University, TR-06531 Ankara, Turkey.
Journal: Bioinformatics. :
Publication Date: Wednesday, December 15, 2004
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Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebrates.
by Lefebvre C, Aude JC, Glémet E, Néri C.
Affliation: INSERM, Avenir Group, Laboratory of Genomic Biology, Centre Paul Broca, 75014 Paris, France; Gene-IT S.A., 92500 Rueil-Malmaison, France.
Journal: Bioinformatics. :
Publication Date: Wednesday, December 15, 2004
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Proteomic analysis for the early detection and rational treatment of cancer--realistic hope?
by Posadas EM, Simpkins F, Liotta LA, Macdonald C, Kohn EC.
Affliation: Laboratory of Pathology, National Cancer Institute and NCI/FDA Clinical Proteomics Program, Bethesda, MD, USA.
Journal: Ann Oncol. 16(1):16-22
Publication Date: Wednesday, December 15, 2004
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Modern drug discovery and development.
by Xu J.
Affliation: BioMinerva Group, 11553 Hadar Drive, San Diego, CA 92126, USA. jxu4@san.rr.com.
Journal: IDrugs. 7(12):1090-3
Publication Date: Wednesday, December 15, 2004
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A quantum chemical method for rapid optimization of protein structures.
by Wada M, Sakurai M.
Affliation: Makuhari R&D Center, Celestar Lexico-Sciences, Inc., Makuhari Techno Garden D17, 1-3 Nakase, Mihama-ku, Chiba 261-8501, Japan.
Journal: J Comput Chem. 26(2):160-8
Publication Date: Wednesday, December 15, 2004
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Evolutionary method for the assembly of rigid protein fragments.
by De Sancho D, Prieto L, Rubio AM, Rey A.
Affliation: Departamento de Química Física, Facultad de Ciencias Químicas, Universidad Complutense, E-28040 Madrid, Spain.
Journal: J Comput Chem. 26(2):131-41
Publication Date: Wednesday, December 15, 2004
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Recent developments in the monitoring, modeling and control of biological production systems.
by Mandenius CF.
Affliation: Division of Biotechnology, Linköping University, 581 83, Linköping, Sweden, cfm@ifm.liu.se.
Journal: Bioprocess Biosyst Eng. 26(6):347-51
Publication Date: Tuesday, December 14, 2004
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A functional hierarchical organization of the protein sequence space.
by Kaplan N, Friedlich M, Fromer M, Linial M.
Affliation:
Journal: BMC Bioinformatics. 5(1):196
Publication Date: Tuesday, December 14, 2004
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Epstein-Barr Virus-Encoded BILF1 Is a Constitutively Active G Protein-Coupled Receptor.
by Paulsen SJ, Rosenkilde MM, Eugen-Olsen J, Kledal TN.
Affliation: Clinical Research Unit #136, H:S Hvidovre Hospital, Kettegaards Allé 30-31, 2650 Hvidovre, Denmark. kledal@biobase.dk.
Journal: J Virol. 79(1):536-46
Publication Date: Tuesday, December 14, 2004
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Evolutionary trace residues in noroviruses: importance in receptor binding, antigenicity, virion assembly, and strain diversity.
by Chakravarty S, Hutson AM, Estes MK, Prasad BV.
Affliation: Verna and Marrs Mclean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030-3498, USA.
Journal: J Virol. 79(1):554-68
Publication Date: Tuesday, December 14, 2004
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Serum protein fingerprinting coupled with artificial neural network distinguishes glioma from healthy population or brain benign tumor.
by Liu J, Zheng S, Yu JK, Zhang JM, Chen Z.
Affliation: Cancer Institute, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou 310009, China.
Journal: J Zhejiang Univ Sci. 6(1):4-10
Publication Date: Monday, December 13, 2004
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Conserved network motifs allow protein-protein interaction prediction.
by Albert I, Albert R.
Affliation: The Huck Institutes for the Life Sciences.
Journal: Bioinformatics. 20(18):3346-52
Publication Date: Monday, December 13, 2004
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SARGE: a tool for creation of putative genetic networks.
by Shaw OJ, Harwood C, Steggles LJ, Wipat A.
Affliation: School of Computing Science, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK.
Journal: Bioinformatics. 20(18):3638-40
Publication Date: Monday, December 13, 2004
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A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome.
by Accardo MC, Giordano E, Riccardo S, Digilio FA, Iazzetti G, Calogero RA, Furia M.
Affliation: Department of Genetics, General and Molecular Biology, University of Naples ‘Federico II’, via Mezzocannone 8, 80134 Napoli, Italy.
Journal: Bioinformatics. 20(18):3293-3301
Publication Date: Monday, December 13, 2004
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Advances to Bayesian network inference for generating causal networks from observational biological data.
by Yu J, Smith VA, Wang PP, Hartemink AJ, Jarvis ED.
Affliation: Department of Neurobiology, Duke University Medical Center, Box 3209, Durham, NC 27710, USA.
Journal: Bioinformatics. 20(18):3594-603
Publication Date: Monday, December 13, 2004
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Quantitative evaluation of recall and precision of CAT Crawler, a search engine specialized on retrieval of Critically Appraised Topics.
by Dong P, Wong LL, Ng S, Loh M, Mondry A.
Affliation:
Journal: BMC Med Inform Decis Mak. 4(1):21
Publication Date: Monday, December 13, 2004
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Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources.
by Andersen JN, Vecchio RL, Kannan N, Gergel J, Neuwald AF, Tonks NK.
Affliation: Cold Spring Harbor Laboratory, Demerec Building, 1 Bungtown Road, Cold Spring Harbor, NY 11724-2208, USA.
Journal: Methods. 35(1):90-114
Publication Date: Monday, December 13, 2004
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The EF-Handome: combining comparative genomic study using FamDBtool, a new bioinformatics tool, and the network of expertise of the European Calcium Society.
by Haiech J, Moulhaye SB, Kilhoffer MC.
Affliation: UMR 7034 CNRS and IFR 85 Gilbert Laustriat, 74, route du Rhin, 67401 ILLKIRCH France.
Journal: Biochim Biophys Acta. 1742(1-3):179-83
Publication Date: Monday, December 13, 2004
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Cas3p belongs to a seven-member family of capsule structure designer proteins.
by Moyrand F, Chang YC, Himmelreich U, Kwon-Chung KJ, Janbon G.
Affliation: Unité de Mycologie Moléculaire, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris Cedex 15, France.
Journal: Eukaryot Cell. 3(6):1513-24
Publication Date: Monday, December 13, 2004
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