Dissecting the human spliceosome through bioinformatics and proteomics approaches.
by Peres Lopes GM, de Souza SJ.
Affliation: Ludwig Institute for Cancer Research, São Paulo Branch, Rua Prof. Antonio Prudente 109, 4 andar São Paulo, 01509-010, SP, Brazil.
Journal: J Bioinform Comput Biol. 1(4):743-50
Publication Date: Tuesday, August 03, 2004
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An interactive tool for extracting exons and SNP from genomic sequence: isolation of HCN1 and HCN3 ion channel genes.
by Liu Y, Wang Y, Folander K, Xie G, Blevins R.
Affliation: Department of Bioinformatics, Merck & Co., Inc., WP53F-3001, West Point, PA 19486, USA. yuan_liu@merck.com
Journal: J Bioinform Comput Biol. 1(3):433-46
Publication Date: Tuesday, August 03, 2004
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Cluster analysis of dynamic parameters of gene expression.
by Wu X, Dewey TG.
Affliation: Keck Graduate Institute of Applied Life Sciences, Claremont, California 91711, USA. xiwei_wu@kgi.edu
Journal: J Bioinform Comput Biol. 1(3):447-58
Publication Date: Tuesday, August 03, 2004
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Use of gene networks for identifying and validating drug targets.
by Imoto S, Savoie CJ, Aburatani S, Kim S, Tashiro K, Kuhara S, Miyano S.
Affliation: Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo, 108-8639 Japan. imoto@ims.u-tokyo.ac.jp
Journal: J Bioinform Comput Biol. 1(3):459-74
Publication Date: Tuesday, August 03, 2004
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A comprehensive whole genome bacterial phylogeny using correlated peptide motifs defined in a high dimensional vector space.
by Stuart GW, Berry MW.
Affliation: Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA. G-Stuart@indstate.edu
Journal: J Bioinform Comput Biol. 1(3):475-93
Publication Date: Tuesday, August 03, 2004
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BTEVAL: a server for evaluation of beta-turn prediction methods.
by Kaur H, Raghava GP.
Affliation: Bioinformatics Center, Institute of Microbial Technology, Sector 39A, Chandigarh, India. raghava@imtech.res.in
Journal: J Bioinform Comput Biol. 1(3):495-504
Publication Date: Tuesday, August 03, 2004
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Predicting risk of coronary artery disease from DNA microarray-based genotyping using neural networks and other statistical analysis tool.
by Tham CK, Heng CK, Chin WC.
Affliation: National University of Singapore, Department of Electrical and Computer Engineering, 10 Kent Ridge Crescent, Singapore 119260, Singapore. eletck@nus.edu.sg
Journal: J Bioinform Comput Biol. 1(3):521-39
Publication Date: Tuesday, August 03, 2004
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Computational strategies for analyzing data in gene expression microarray experiments.
by Aittokallio T, Kurki M, Nevalainen O, Nikula T, West A, Lahesmaa R.
Affliation: Department of Computational Biology, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa-Shi, Chiba 277-8562, Japan. jun@gi.k.u-tokyo.ac.jp
Journal: J Bioinform Comput Biol. 1(3):541-86
Publication Date: Tuesday, August 03, 2004
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Efficient reconstruction of haplotype structure via perfect phylogeny.
by Eskin E, Halperin E, Karp RM.
Affliation: Computer Science Department, Columbia University, USA. eeskin@cs.columbia.edu
Journal: J Bioinform Comput Biol. 1(1):1-20
Publication Date: Tuesday, August 03, 2004
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CUBIC: identification of regulatory binding sites through data clustering.
by Olman V, Xu D, Xu Y.
Affliation: Protein Informatics Group, Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831-6480, USA.
Journal: J Bioinform Comput Biol. 1(1):21-40
Publication Date: Tuesday, August 03, 2004
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Efficient inference of haplotypes from genotypes on a pedigree.
by Li J, Jiang T.
Affliation: Department of Computer Science, University of California, Riverside, CA, USA. jili@cs.ucr.edu
Journal: J Bioinform Comput Biol. 1(1):41-69
Publication Date: Tuesday, August 03, 2004
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Two notes on genome rearrangement.
by Ozery-Flato M, Shamir R.
Affliation: School of Computer Science, Tel Aviv University, Israel. ozery@post.tau.ac.il
Journal: J Bioinform Comput Biol. 1(1):71-94
Publication Date: Tuesday, August 03, 2004
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RAPTOR: optimal protein threading by linear programming.
by Xu J, Li M, Kim D, Xu Y.
Affliation: Department of Computer Science, University of Waterloo, Waterloo, Ont. N2L 3G1, Canada. j3xu@math.uwaterloo.ca
Journal: J Bioinform Comput Biol. 1(1):95-117
Publication Date: Tuesday, August 03, 2004
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Recognizing complex, asymmetric functional sites in protein structures using a Bayesian scoring function.
by Wei L, Altman RB.
Affliation: Nexus Genomics, Inc., 229 Polaris Ave., Suite 6, Mountain View, CA 94043, USA. wei@nexusgenomics.com
Journal: J Bioinform Comput Biol. 1(1):119-38
Publication Date: Tuesday, August 03, 2004
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Data mining tools for biological sequences.
by Liu H, Wong L.
Affliation: Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613, Singapore. huiqing@i2r.a-star.edu.sg
Journal: J Bioinform Comput Biol. 1(1):139-67
Publication Date: Tuesday, August 03, 2004
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Assessing the impact of predictive biosimulation on drug discovery and development.
by Michelson S.
Affliation: Entelos, Inc., 110 Marsh Dr., Foster City, CA 94404, USA. michelson@entelos.com
Journal: J Bioinform Comput Biol. 1(1):169-77
Publication Date: Tuesday, August 03, 2004
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From immunoinformatics to immunomics.
by Brusic V.
Affliation: Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613, Singapore. vladimir@i2r.a-star.edu.sg
Journal: J Bioinform Comput Biol. 1(1):179-81
Publication Date: Tuesday, August 03, 2004
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Bioinformatics meets proteomics--bridging the gap between mass spectrometry data analysis and cell biology.
by Kearney P, Thibault P.
Affliation: Caprion Pharmaceuticals, 7150 Alexander Fleming, St-Laurent, Québec, H4S 2C8, Canada. pkearney@caprion.com
Journal: J Bioinform Comput Biol. 1(1):183-200
Publication Date: Tuesday, August 03, 2004
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An integrated probabilistic model for functional prediction of proteins.
by Deng M, Chen T, Sun F.
Affliation: Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, 1042 West 36th Place, Los Angeles, CA 90089-1113, USA.
Journal: J Comput Biol. 11(2-3):463-75
Publication Date: Monday, August 02, 2004
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Joint classifier and feature optimization for comprehensive cancer diagnosis using gene expression data.
by Krishnapuram B, Carin L, Hartemink AJ.
Affliation: Department of Electrical Engineering, Duke University, Durham, NC 27708-0291, USA.
Journal: J Comput Biol. 11(2-3):227-42
Publication Date: Monday, August 02, 2004
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