Automated species identification: why not?
by Gaston KJ, O'Neill MA.
Affliation: Biodiversity and Macroecology Group, Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK. k.j.gaston@sheffield.ac.uk
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):655-67
Publication Date: Thursday, July 15, 2004
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The promise of a DNA taxonomy.
by Blaxter ML.
Affliation: Institute of Cell, Animal and Population Biology, University of Edinburgh, King's Buildings, Edinburgh EH9 3JT, UK. mark.blaxter@ed.ac.uk
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):669-79
Publication Date: Thursday, July 15, 2004
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Towards a working list of all known plant species.
by Lughadha EN.
Affliation: Royal Botanic Gardens, Kew, Richmond TW9 3AB, UK. e.lughadha@rbgkew.org.uk
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):681-7
Publication Date: Thursday, July 15, 2004
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Biodiversity informatics: managing and applying primary biodiversity data.
by Soberón J, Peterson AT.
Affliation: Instituto de Ecología, National University of Mexico and Comisión Nacional de Biodiversidad, México, Periférico-Insurgentes 4903, Tlalpan, 14010 DF, Mexico. jsoberon@xolo.conabio.gob.mx
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):689-98
Publication Date: Thursday, July 15, 2004
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TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics.
by Jobb G, von Haeseler A, Strimmer K.
Affliation: Department of Statistics, University of Munich, Ludwigstr, 33, D-80539 Munich, Germany. gangolf@treefinder.de
Journal: BMC Evol Biol. 06 2004;4(1):18
Publication Date: Wednesday, July 14, 2004
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Asynchronous adaptive time step in quantitative cellular automata modeling.
by Zhu H, Pang PY, Sun Y, Dhar P.
Affliation: Bioinformatics Institute, National University of Singapore, 138671. zhuhao@bii.a-star.edu.sg
Journal: BMC Bioinformatics. 06 2004;5(1):85
Publication Date: Wednesday, July 14, 2004
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Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics.
by Zeeberg BR, Riss J, Kane DW, Bussey KJ, Uchio E, Linehan WM, Barrett JC, Weinstein JN.
Affliation: Genomics & Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD 20892 USA. barry@discover.nci.nih.gov
Journal: BMC Bioinformatics. 06 2004;5(1):80
Publication Date: Wednesday, July 14, 2004
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Plant genomics: present state and a perspective on future developments.
by Rafalski JA.
Affliation: j-antoni.rafalski@usa.dupont.com
Journal: Brief Funct Genomic Proteomic. 1(1):80-94
Publication Date: Wednesday, July 14, 2004
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Extracellular and circulating redox- and metalloregulated eRNA and eRNP: copper ion-structured RNA cytokines (angiotropin ribokines) and bioaptamer targets imparting RNA chaperone and novel biofunctions to S100-EF-hand and disease-associated proteins.
by Wissler JH.
Affliation: ARCONS Institute for Applied Research & Didactics, D-61231 Bad Nauheim, Germany. jhw@arcons-research.de
Journal: Ann N Y Acad Sci. 1022:163-84
Publication Date: Wednesday, July 14, 2004
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Cancer proteomics: Serum diagnostics for tumor marker discovery.
by Rai AJ, Chan DW.
Affliation: Department of Pathology, Division of Clinical Chemistry, and Center for Biomarker Discovery, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA. arai@jhmi.edu
Journal: Ann N Y Acad Sci. 1022:286-94
Publication Date: Wednesday, July 14, 2004
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Clinical proteomics and biomarker discovery.
by Johann DJ, McGuigan MD, Patel AR, Tomov S, Ross S, Conrads TP, Veenstra TD, Fishman DA, Whiteley GR, Petricoin EF, Liotta LA.
Affliation: NCI-FDA Clinical Proteomics Program, Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA. johannd@mail.nih.gov
Journal: Ann N Y Acad Sci. 1022:295-305
Publication Date: Wednesday, July 14, 2004
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Target discovery and validation.
by Solari R.
Affliation: Medical Research Council Technology, London, UK. roberto.solari@tech.mrc.ac.uk
Journal: Ernst Schering Res Found Workshop. (48):19-46
Publication Date: Tuesday, July 13, 2004
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Replica model for an unusual directed polymer in 1+1 dimensions and prediction of the extremal parameter of gapped sequence alignment statistics.
by Yu YK.
Affliation: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
Journal: Phys Rev E Stat Nonlin Soft Matter Phys. 06 2004;69(6 Pt 1):061904
Publication Date: Monday, July 12, 2004
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Reconstruction of protein structures from a vectorial representation.
by Porto M, Bastolla U, Roman HE, Vendruscolo M.
Affliation: Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, 01187 Dresden, Germany.
Journal: Phys Rev Lett. 05 2004;92(21):218101
Publication Date: Monday, July 12, 2004
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Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships.
by Rigali S, Schlicht M, Hoskisson P, Nothaft H, Merzbacher M, Joris B, Titgemeyer F.
Affliation: Centre d'Ingénierie des Protéines, Université de Liège, Institut de Chimie B6a, B-4000, Liège, Belgium. srigali@ulg.ac.be
Journal: Nucleic Acids Res. 06 2004;32(11):3418-26
Publication Date: Monday, July 12, 2004
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A probabilistic model of 3' end formation in Caenorhabditis elegans.
by Hajarnavis A, Korf I, Durbin R.
Affliation: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.
Journal: Nucleic Acids Res. 06 2004;32(11):3392-9
Publication Date: Monday, July 12, 2004
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Low number of mitochondrial pseudogenes in the chicken (Gallus gallus) nuclear genome: implications for molecular inference of population history and phylogenetics.
by Pereira SL, Baker AJ.
Affliation: Centre for Biodiversity and Conservation Biology - Royal Ontario Museum, Toronto, ON, M5S 2C6 Canada. sergio.pereira@utoronto.ca
Journal: BMC Evol Biol. 06 2004;4(1):17
Publication Date: Friday, July 09, 2004
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Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta).
by Müller T, Rahmann S, Dandekar T, Wolf M.
Affliation: Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany. tobias.mueller@biozentrum.uni-wuerzburg.de
Journal: BMC Evol Biol. 06 2004;4(1):20
Publication Date: Friday, July 09, 2004
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Improved protein structure selection using decoy-dependent discriminatory functions.
by Wang K, Fain B, Levitt M, Samudrala R.
Affliation: Department of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA. dna@u.washington.edu
Journal: BMC Struct Biol. 06 2004;4(1):8
Publication Date: Friday, July 09, 2004
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Boosting accuracy of automated classification of fluorescence microscope images for location proteomics.
by Huang K, Murphy RF.
Affliation: Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213 USA. khuang@andrew.cmu.edu
Journal: BMC Bioinformatics. 06 2004;5(1):78
Publication Date: Friday, July 09, 2004
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