The emerging in-silico scientist: how text-based bioinformatics is bridging biology and artificial intelligence.
by Wren JD.
Affliation: Advanced Center for Genome Technology, Department of Botany and Microbiology, The University of Oklahoma, Norman 73019, USA. Jonathan.Wren@OU.edu
Journal: IEEE Eng Med Biol Mag. 2004 Mar-Apr;23(2):87-93
Publication Date: Wednesday, July 21, 2004
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Discovery of ovarian cancer biomarkers in serum using NanoLC electrospray ionization TOF and FT-ICR mass spectrometry.
by Bergen HR, Vasmatzis G, Cliby WA, Johnson KL, Oberg AL, Muddiman DC.
Affliation: W.M. Keck FT-ICR Mass Spectrometry Laboratory, Mayo Proteomics Research Center, Rochester, MN, USA.
Journal: Dis Markers. 2003-2004;19(4-5):239-49
Publication Date: Wednesday, July 21, 2004
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Protein network inference from multiple genomic data: a supervised approach.
by Yamanishi Y, Vert JP, Kanehisa M.
Affliation: Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, Japan. yoshi@kuicr.kyoto-u.ac.jp
Journal: Bioinformatics. 20 Suppl 1:i363-70
Publication Date: Tuesday, July 20, 2004
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Primer Prim'er: a web based server for automated primer design.
by Everett JK, Acton TB, Montelione GT.
Affliation: Department of Biochemistry, Robert Wood Johnson Medical School, Piscataway, NJ 08854-5638, USA.
Journal: J Struct Funct Genomics. 5(1-2):13-21
Publication Date: Tuesday, July 20, 2004
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Characterization of protein structure and function at genome scale with a computational prediction pipeline.
by Xu D, Kim D, Dam P, Shah M, Uberbacher EC, Xu Y.
Affliation: Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA.
Journal: Genet Eng (N Y). 25:269-93
Publication Date: Tuesday, July 20, 2004
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Bioinformatics for glycomics: status, methods, requirements and perspectives.
by von der Lieth CW, Bohne-Lang A, Lohmann KK, Frank M.
Affliation: German Cancer Research Center, Central Spectroscopic Department B090, Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany. w.vonderlieth@dkfz.de
Journal: Brief Bioinform. 5(2):164-78
Publication Date: Tuesday, July 20, 2004
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Jemboss reloaded.
by Mullan L.
Affliation: European Bioinformatics Institute, Genome Campus, Hinxton, Cambridge CB10 1SD, UK. lisa@ebi.ac.uk
Journal: Brief Bioinform. 5(2):193-5
Publication Date: Tuesday, July 20, 2004
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News section.
by Altschuler J, Safran M, Lancet D, Iyer L.
Affliation: Harvard University.
Journal: Brief Bioinform. 5(2):204-6
Publication Date: Tuesday, July 20, 2004
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Predicting genetic regulatory response using classification.
by Middendorf M, Kundaje A, Wiggins C, Freund Y, Leslie C.
Affliation: Department of Physics, Columbia University, NY, NY 10027, USA.
Journal: Bioinformatics. 20 Suppl 1:i232-40
Publication Date: Tuesday, July 20, 2004
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The use of urine proteomic and metabonomic patterns for the diagnosis of interstitial cystitis and bacterial cystitis.
by Van QN, Klose JR, Lucas DA, Prieto DA, Luke B, Collins J, Burt SK, Chmurny GN, Issaq HJ, Conrads TP, Veenstra TD, Keay SK.
Affliation: Laboratory of Proteomics and Analytical Technologies, SAIC-Frederick, Inc., NCI Frederick, Frederick, MD, USA.
Journal: Dis Markers. 2003-2004;19(4-5):169-83
Publication Date: Monday, July 19, 2004
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Evolutionary relatedness between glycolytic enzymes most frequently occurring in genomes.
by Oslancová A, Janecek S.
Affliation: Institute of Molecular Biology, Center of Excellence for Molecular Medicine, Slovak Academy of Sciences, 845 51 Bratislava, Slovakia.
Journal: Folia Microbiol (Praha). 49(3):247-58
Publication Date: Monday, July 19, 2004
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Identification of conserved regulatory elements by comparative genome analysis.
by Lenhard B, Sandelin A, Mendoza L, Engström P, Jareborg N, Wasserman WW.
Affliation: Center for Genomics and Bioinformatics, Karolinska Institutet, 171 77 Stockholm, Sweden.
Journal: J Biol. 05 2003;2(2):13
Publication Date: Friday, July 16, 2004
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Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes.
by Wan XF, Xu D, Kleinhofs A, Zhou J.
Affliation: Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA. wanx@missouri.edu
Journal: BMC Evol Biol. 06 2004;4(1):19
Publication Date: Friday, July 16, 2004
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Molecular cloning and characterization of cDNA encoding fibrinolytic enzyme-3 from earthworm Eisenia foetida.
by Dong GQ, Yuan XL, Shan YJ, Zhao ZH, Chen JP, Cong YW.
Affliation: Department of Experimental Therapy of ARS, Beijing Institute of Radiation Medicine, China.
Journal: Acta Biochim Biophys Sin (Shanghai). 36(4):303-8
Publication Date: Thursday, July 15, 2004
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Introduction. Taxonomy for the twenty-first century.
by Godfray HC, Knapp S.
Affliation: NERC Centre for Population Biology, Imperial College London, Ascot, UK.
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):559-69
Publication Date: Thursday, July 15, 2004
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Taxonomic triage and the poverty of phylogeny.
by Wheeler QD.
Affliation: Department of Entomology, Cornell University, Ithaca, NY 14853, USA. qdw1@cornell.edu
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):571-83
Publication Date: Thursday, July 15, 2004
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Taxonomy and fossils: a critical appraisal.
by Forey PL, Fortey RA, Kenrick P, Smith AB.
Affliation: Department of Palaeontology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK. plf@nhm.ac.uk
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):639-53
Publication Date: Thursday, July 15, 2004
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Automated species identification: why not?
by Gaston KJ, O'Neill MA.
Affliation: Biodiversity and Macroecology Group, Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK. k.j.gaston@sheffield.ac.uk
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):655-67
Publication Date: Thursday, July 15, 2004
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The promise of a DNA taxonomy.
by Blaxter ML.
Affliation: Institute of Cell, Animal and Population Biology, University of Edinburgh, King's Buildings, Edinburgh EH9 3JT, UK. mark.blaxter@ed.ac.uk
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):669-79
Publication Date: Thursday, July 15, 2004
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Towards a working list of all known plant species.
by Lughadha EN.
Affliation: Royal Botanic Gardens, Kew, Richmond TW9 3AB, UK. e.lughadha@rbgkew.org.uk
Journal: Philos Trans R Soc Lond B Biol Sci. 359(1444):681-7
Publication Date: Thursday, July 15, 2004
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