Identify catalytic triads of serine hydrolases by support vector machines.
by Cai YD, Zhou GP, Jen CH, Lin SL, Chou KC.
Affliation: Shanghai Research Center of Biotechnology, Chinese Academy of Sciences, Shanghai 200233, China. y.cai@umist.ac.uk
Journal: J Theor Biol. 228(4):551-7
Publication Date: Friday, June 04, 2004
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Functionally and structurally relevant residues of enzymes: are they segregated or overlapping?
by Magyar C, Tüdos E, Simon I.
Affliation: Biological Research Center, Institute of Enzymology, Hungarian Academy of Sciences, PO Box 7, H-1518 Budapest, Hungary.
Journal: FEBS Lett. 567(2-3):239-42
Publication Date: Friday, June 04, 2004
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Apparent redundancy of electron transfer pathways via bc(1) complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans.
by Brasseur G, Levican G, Bonnefoy V, Holmes D, Jedlicki E, Lemesle-Meunier D.
Affliation: Laboratoire de Bioénergétique et Ingénierie des Protéines, IBSM, CNRS, 31 Chemin J. Aiguier 13402 Marseille Cedex 20, France.
Journal: Biochim Biophys Acta. 1656(2-3):114-26
Publication Date: Friday, June 04, 2004
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How bioinformatics can help reverse engineer human aging.
by de Magalhães JP, Toussaint O.
Affliation: Unit of Cellular Biochemistry and Biology (URBC), Department of Biology, University of Namur (FUNDP), Rue de Bruxelles 61, B-5000 Namur, Belgium. jpnitya@senescence.info
Journal: Ageing Res Rev. 3(2):125-41
Publication Date: Friday, June 04, 2004
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Challenges to environmental toxicology and epidemiology: where do we stand and which way do we go?
by Pesch B, Brüning T, Frentzel-Beyme R, Johnen G, Harth V, Hoffmann W, Ko Y, Ranft U, Traugott UG, Thier R, Taeger D, Bolt HM.
Affliation: Berufsgenossenschaftliches Forschungsinstitut für Arbeitsmedizin, Ruhr-Universität Bochum, Bürkle-de-la-Camp-Platz 1, D-44789 Bochum, Germany. pesch@bgfa.de
Journal: Toxicol Lett. 151(1):255-66
Publication Date: Friday, June 04, 2004
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Incorrectly predicted genes in rice?
by Cruveiller S, Jabbari K, Clay O, Bernardi G.
Affliation: Laboratorio di Evoluzione Molecolare, Stazione Zoologica Anton Dohrn, Villa comunale, 80121 Naples, Italy.
Journal: Gene. 333:187-8
Publication Date: Friday, June 04, 2004
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Tumor classification using phylogenetic methods on expression data.
by Desper R, Khan J, Schäffer AA.
Affliation: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human Services, Bldg. 38A, Room 8N805, 8600 Rockville Pike, Bethesda, MD 20894, USA. desper@ncbi.nlm.nih.gov
Journal: J Theor Biol. 228(4):477-96
Publication Date: Friday, June 04, 2004
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Immunome-derived vaccines.
by De Groot AS.
Affliation:
Journal: Expert Opin Biol Ther. 4(6):767-72
Publication Date: Thursday, June 03, 2004
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Genes involved in formation of structured multicellular communities by Bacillus subtilis.
by Branda SS, González-Pastor JE, Dervyn E, Ehrlich SD, Losick R, Kolter R.
Affliation: Department of Microbiology and Molecular Genetics, Harvard Medical School, 200 Longwood Ave., Boston, MA 02115, USA.
Journal: J Bacteriol. 186(12):3970-9
Publication Date: Thursday, June 03, 2004
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Prediction of protein-protein interactions based on surface patch comparison.
by Carugo O, Franzot G.
Affliation: Department of General Chemistry, Pavia University, Pavia, Italy. carugo@tasc.infm.it
Journal: Proteomics. 4(6):1727-36
Publication Date: Wednesday, June 02, 2004
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Advances in the prediction of protein targeting signals.
by Schneider G, Fechner U.
Affliation: Johann Wolfgang Goethe-Universität, Institut für Organische Chemie und Chemische Biologie, Frankfurt, Germany. gisbert.schneider@modlab.de
Journal: Proteomics. 4(6):1571-80
Publication Date: Wednesday, June 02, 2004
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Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences.
by Small I, Peeters N, Legeai F, Lurin C.
Affliation: Station de Génétique et Amélioration des Plantes, INRA, Versailles, France. small@evry.inra.fr
Journal: Proteomics. 4(6):1581-90
Publication Date: Wednesday, June 02, 2004
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Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.
by Gonnet P, Rudd KE, Lisacek F.
Affliation: Institute of Computational Science, Swiss Federal Institute of Technology, Zürich, Switzerland. gonnetp@inf.ethz.ch
Journal: Proteomics. 4(6):1597-613
Publication Date: Wednesday, June 02, 2004
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Development of a mass fingerprinting tool for automated interpretation of oligosaccharide fragmentation data.
by Joshi HJ, Harrison MJ, Schulz BL, Cooper CA, Packer NH, Karlsson NG.
Affliation: Proteome Systems, Sydney, NSW, Australia. hirenj@proteomesystems.com
Journal: Proteomics. 4(6):1650-64
Publication Date: Wednesday, June 02, 2004
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eShadow: a tool for comparing closely related sequences.
by Ovcharenko I, Boffelli D, Loots GG.
Affliation: Energy, Environment, Biology and Institutional Computing (EEBI), Lawrence Livermore National Laboratory, Livermore, California 94550, USA. ovcharenko1@llnl.gov
Journal: Genome Res. 14(6):1191-8
Publication Date: Wednesday, June 02, 2004
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Mathematical and computational models of immune-receptor signalling.
by Goldstein B, Faeder JR, Hlavacek WS.
Affliation: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA. bxg@lanl.gov
Journal: Nat Rev Immunol. 4(6):445-56
Publication Date: Wednesday, June 02, 2004
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Post-translational modifications: a challenge for proteomics and bioinformatics.
by Appel RD, Bairoch A.
Affliation:
Journal: Proteomics. 4(6):1525-6
Publication Date: Wednesday, June 02, 2004
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The RESID Database of Protein Modifications as a resource and annotation tool.
by Garavelli JS.
Affliation: The EMBL Outstation-European Bioinformatics Institute, Welcome Trust Genome Campus, Hinxton, Cambs., UK. john.garavelli@ebi.ac.uk
Journal: Proteomics. 4(6):1527-33
Publication Date: Wednesday, June 02, 2004
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Annotation of post-translational modifications in the Swiss-Prot knowledge base.
by Farriol-Mathis N, Garavelli JS, Boeckmann B, Duvaud S, Gasteiger E, Gateau A, Veuthey AL, Bairoch A.
Affliation: Swiss Institute of Bioinformatics, Centre Médical Universitaire, Geneva, Switzerland. nathalie.farriol-mathis@isb-sib.ch
Journal: Proteomics. 4(6):1537-50
Publication Date: Wednesday, June 02, 2004
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PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation.
by Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B.
Affliation: Cell Signaling Technology, Beverly, MA 01915, USA. phornbeck@cellsignal.com
Journal: Proteomics. 4(6):1551-61
Publication Date: Wednesday, June 02, 2004
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