Coupling in silico and in vitro analysis of peptide-MHC binding: a bioinformatic approach enabling prediction of superbinding peptides and anchorless epitopes.
by Doytchinova IA, Walshe VA, Jones NA, Gloster SE, Borrow P, Flower DR.
Affliation: Edward Jenner Institute for Vaccine Research-Compton, High Street, Berkshire, Compton RG20 7NN, United Kingdom.
Journal: J Immunol. 172(12):7495-502
Publication Date: Wednesday, June 09, 2004
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RELIC--a bioinformatics server for combinatorial peptide analysis and identification of protein-ligand interaction sites.
by Mandava S, Makowski L, Devarapalli S, Uzubell J, Rodi DJ.
Affliation: Biociences Division, Argonne National Laboratory, Argonne, IL 60439, USA.
Journal: Proteomics. 4(5):1439-60
Publication Date: Wednesday, June 09, 2004
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Intregrated analysis of the human cardiac transcriptome, proteome and phosphoproteome.
by Ruse CI, Tan FL, Kinter M, Bond M.
Affliation: Department of Physiology and Biophysics, Case Western Reserve University, School of Medicine, Cleveland, OH, USA.
Journal: Proteomics. 4(5):1505-16
Publication Date: Wednesday, June 09, 2004
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Computational approaches to protein-protein interaction.
by Franzot G, Carugo O.
Affliation: International School for Advanced Studies, Via Beirut 4, I-34014 Trieste, Italy.
Journal: J Struct Funct Genomics. 4(4):245-55
Publication Date: Wednesday, June 09, 2004
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From the Arctic to fetal life: physiological importance and structural basis of an 'additional' chloride-binding site in haemoglobin.
by De Rosa MC, Castagnola M, Bertonati C, Galtieri A, Giardina B.
Affliation: Institute of Biochemistry and Clinical Biochemistry and CNR Institute of Chemistry of Molecular Recognition, Catholic University of Rome, L.go F. Vito 1, 00168 Rome, Italy.
Journal: Biochem J. 380(Pt 3):889-96
Publication Date: Tuesday, June 08, 2004
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The prokaryotic selenoproteome.
by Kryukov GV, Gladyshev VN.
Affliation: Department of Biochemistry, University of Nebraska, Lincoln, Nebraska 68588-0664, USA.
Journal: EMBO Rep. 04 2004;5(5):538-43
Publication Date: Tuesday, June 08, 2004
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PEACH 4 with ABINIT-MP: a general platform for classical and quantum simulations of biological molecules.
by Komeiji Y, Inadomi Y, Nakano T.
Affliation: National Institute of Advanced Industrial Science and Technology, AIST Tsukuba Central 2, Japan. komeiji@aist.go.jp
Journal: Comput Biol Chem. 28(2):155-61
Publication Date: Tuesday, June 08, 2004
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PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences.
by D'Ascenzo MD, Collmer A, Martin GB.
Affliation: Boyce Thompson Institute for Plant Research, Ithaca, NY 14853, USA. mdd9@cornell.edu
Journal: Nucleic Acids Res. 06 2004;32(10):3124-35
Publication Date: Tuesday, June 08, 2004
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Evaluation of distance metrics for ligand-based similarity searching.
by Fechner U, Schneider G.
Affliation: Johann Wolfgang Goethe-Universität, Institut für Organische Chemie und Chemische Biologie, Marie-Curie-Strasse 11, 60439 Frankfurt, Germany.
Journal: Chembiochem. 5(4):538-40
Publication Date: Tuesday, June 08, 2004
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Comparative genomics identifies genes shared by distantly related insect-transmitted plant pathogenic mollicutes.
by Bai X, Zhang J, Holford IR, Hogenhout SA.
Affliation: Department of Entomology, The Ohio State University, Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, OH 44691, USA.
Journal: FEMS Microbiol Lett. 235(2):249-58
Publication Date: Tuesday, June 08, 2004
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Development of a multiplex PCR-ligase detection reaction assay for diagnosis of infection by the four parasite species causing malaria in humans.
by McNamara DT, Thomson JM, Kasehagen LJ, Zimmerman PA.
Affliation: The Center for Global Health and Diseases, Case Western Reserve University School of Medicine, Fourth Floor, Wolstein Research Building, 2103 Cornell Rd., Cleveland, OH 44106-7286, USA.
Journal: J Clin Microbiol. 42(6):2403-10
Publication Date: Tuesday, June 08, 2004
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Computational approaches to understand alpha-conotoxin interactions at neuronal nicotinic receptors.
by Dutertre S, Lewis RJ.
Affliation: Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.
Journal: Eur J Biochem. 271(12):2327-34
Publication Date: Tuesday, June 08, 2004
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Emerging technologies in neurotoxicology: Session III summary and research needs.
by Harry GJ.
Affliation: Neurotoxicology Group, National Institute of Environmental Health Sciences (NIEHS), MD C1-04, P.O. Box 12233, Research Triangle Park, NC 27709, USA. harry@niehs.nih.gov
Journal: Neurotoxicology. 25(4):503-6
Publication Date: Tuesday, June 08, 2004
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Human embryonic stem cells express a unique set of microRNAs.
by Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS, Moon SY, Kim VN, Kim KS.
Affliation: Cell and Gene Therapy Research Institute, Pochon CHA University College of Medicine, Seoul 135-081, South Korea.
Journal: Dev Biol. 270(2):488-98
Publication Date: Tuesday, June 08, 2004
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[G-protein coupled peptide receptors and their ligands in human genome]
by Levchenko ME, Poroikov VV, Kanehisa M.
Affliation: V.N. Orekhovich Institute of Biomedical Chemistry Rus. Acad. Med. Sci., Pogodinskaya Str., 10, Moscow, 119121, Russia.
Journal: Biomed Khim. 2004 Mar-Apr;50(2):149-58
Publication Date: Monday, June 07, 2004
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The Drosophila Bruno paralogue Bru-3 specifically binds the EDEN translational repression element.
by Delaunay J, Le Mée G, Ezzeddine N, Labesse G, Terzian C, Capri M, Aït-Ahmed O.
Affliation: Institut de Génétique Humaine, UPR 1142 CNRS, 141 Rue de la Cardonille, 34396 Montpellier Cedex 5, France.
Journal: Nucleic Acids Res. 06 2004;32(10):3070-82
Publication Date: Monday, June 07, 2004
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Genome-wide identification of genes likely to be involved in human genetic disease.
by López-Bigas N, Ouzounis CA.
Affliation: Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge CB10 1SD, UK.
Journal: Nucleic Acids Res. 06 2004;32(10):3108-14
Publication Date: Monday, June 07, 2004
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A structural study for the optimisation of functional motifs encoded in protein sequences.
by Via A, Helmer-Citterich M.
Affliation: Centre for Molecular Bioinformatics, Dept, of Biology, University of Rome Tor Vergata, Rome, Italy. allegra@cbm.bio.uniroma2.it
Journal: BMC Bioinformatics. 04 2004;5(1):50
Publication Date: Monday, June 07, 2004
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A hybrid clustering approach to recognition of protein families in 114 microbial genomes.
by Harlow TJ, Gogarten JP, Ragan MA.
Affliation: Institute for Molecular Bioscience, The University of Queensland, Brisbane, Qld 4072, Australia. t.harlow@imb.uq.edu.au
Journal: BMC Bioinformatics. 04 2004;5(1):45
Publication Date: Friday, June 04, 2004
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Bioinformatics tools to understand human diseases.
by Debes JD, Urrutia R.
Affliation: Gastroenterology Research Unit, Mayo Clinic, Rochester, MN 55905, USA.
Journal: Surgery. 135(6):579-85
Publication Date: Friday, June 04, 2004
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