The difficult interpretation of transcriptome data: the case of the GATC regulatory network.
by Riva A, Delorme MO, Chevalier T, Guilhot N, Hénaut C, Hénaut A.
Affliation: CNRS, Laboratoire Génome et Informatique, Tour Evry 2, 523 Place des Terrasses, 91034 Evry cedex, France. gucki@genopole.cnrs.fr
Journal: Comput Biol Chem. 28(2):109-18
Publication Date: Friday, May 07, 2004
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MAPPP: MHC class I antigenic peptide processing prediction.
by Hakenberg J, Nussbaum AK, Schild H, Rammensee HG, Kuttler C, Holzhütter HG, Kloetzel PM, Kaufmann SH, Mollenkopf HJ.
Affliation: University of Ulm, Department of Theoretical Computer Science, Ulm, Germany.
Journal: Appl Bioinformatics. 2(3):155-8
Publication Date: Friday, May 07, 2004
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Proceedings of the New Zealand Bioinformatics Conference 2003. February, 2003. Wellington, New Zealand.
by
Affliation:
Journal: Appl Bioinformatics. 2(3 Suppl):S1-107
Publication Date: Friday, May 07, 2004
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Support vector machine applications in bioinformatics.
by Byvatov E, Schneider G.
Affliation: Johann Wolfgang Goethe-Universit?ät, Institut für Organische Chemie und Chemische Biologie, Frankfurt, Germany.
Journal: Appl Bioinformatics. 2(2):67-77
Publication Date: Friday, May 07, 2004
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A library of efficient bioinformatics algorithms.
by Della Vedova G, Dondi R.
Affliation: Dipartimento Statistica, Universit Milano-Bicocca, Milan, Italy. gianluca.dellavedova@unimb.it
Journal: Appl Bioinformatics. 2(2):117-21
Publication Date: Friday, May 07, 2004
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Immunoinformatics and the prediction of immunogenicity.
by Flower DR, Doytchinova IA.
Affliation: Edward Jenner Institute for Vaccine Research, Compton, Berkshire, UK. darren.flower@jenner.ac.uk
Journal: Appl Bioinformatics. 1(4):167-76
Publication Date: Friday, May 07, 2004
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Comparative modelling: an essential methodology for protein structure prediction in the post-genomic era.
by Contreras-Moreira B, Fitzjohn PW, Bates PA.
Affliation: Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London, United Kingdom.
Journal: Appl Bioinformatics. 1(4):177-90
Publication Date: Friday, May 07, 2004
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Artificial intelligence techniques for bioinformatics.
by Narayanan A, Keedwell EC, Olsson B.
Affliation: School of Engineering and Computer Sciences, University of Exeter, UK. A.Narayanan@ex.ac.uk
Journal: Appl Bioinformatics. 1(4):191-222
Publication Date: Friday, May 07, 2004
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Prediction of amino acid pairs sensitive to mutations in the spike protein from SARS related coronavirus.
by Wu G, Yan S.
Affliation: DreamSciTech Consulting Co. Ltd., 301, Building 12, Nanyou A-zone, Jainnan Road, CN-518054, Shenzhen, PR China. hongguanglishibahao@yahoo.com
Journal: Peptides. 24(12):1837-45
Publication Date: Thursday, May 06, 2004
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Correlations of amino acids in proteins.
by Du Q, Wei D, Chou KC.
Affliation: Tianjin Institute of Bioinformatics and Drug Discovery (TIBDD), Tianjin Normal University, 241 Weijin Road, Hexi District, Tianjin 300074, China.
Journal: Peptides. 24(12):1863-9
Publication Date: Thursday, May 06, 2004
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Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.
by Glazko GV, Mushegian AR.
Affliation: Stowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA. gvg@stowers-institute.org
Journal: Genome Biol. 04 2004;5(5):R32
Publication Date: Thursday, May 06, 2004
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Transcriptional regulation of protein complexes in yeast.
by Simonis N, van Helden J, Cohen GN, Wodak SJ.
Affliation: Service de Conformation des Macromolécules Biologiques, Centre de Biologie Structurale et Bioinformatique, CP 263, Université Libre de Bruxelles, Bld du Triomphe, B-1050 Bruxelles, Belgium.
Journal: Genome Biol. 04 2004;5(5):R33
Publication Date: Thursday, May 06, 2004
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ELXR: a resource for rapid exon-directed sequence analysis.
by Schageman JJ, Horton CJ, Niu S, Garner HR, Pertsemlidis A.
Affliation: Eugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Harry Hines Boulevard, Dallas, TX 75390, USA. jeff.schageman@utsouthwestern.edu
Journal: Genome Biol. 04 2004;5(5):R36
Publication Date: Thursday, May 06, 2004
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A regulatory code for neurogenic gene expression in the Drosophila embryo.
by Markstein M, Zinzen R, Markstein P, Yee KP, Erives A, Stathopoulos A, Levine M.
Affliation: Department of Molecular and Cellular Biology, Division of Genetics and Development, 401 Barker Hall, University of California, Berkeley, CA 94720, USA.
Journal: Development. 131(10):2387-94
Publication Date: Thursday, May 06, 2004
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Integrating high-throughput and computational data elucidates bacterial networks.
by Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO.
Affliation: Bioengineering Department, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0412, USA.
Journal: Nature. 429(6987):92-6
Publication Date: Thursday, May 06, 2004
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Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone.
by MacKay VL, Li X, Flory MR, Turcott E, Law GL, Serikawa KA, Xu XL, Lee H, Goodlett DR, Aebersold R, Zhao LP, Morris DR.
Affliation: Department of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Journal: Mol Cell Proteomics. 02 2004;3(5):478-89
Publication Date: Thursday, May 06, 2004
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A high-throughput approach for subcellular proteome: identification of rat liver proteins using subcellular fractionation coupled with two-dimensional liquid chromatography tandem mass spectrometry and bioinformatic analysis.
by Jiang XS, Zhou H, Zhang L, Sheng QH, Li SJ, Li L, Hao P, Li YX, Xia QC, Wu JR, Zeng R.
Affliation: Research Center for Proteome Analysis, Key Lab of Proteomics, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
Journal: Mol Cell Proteomics. 01 2004;3(5):441-55
Publication Date: Thursday, May 06, 2004
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Construction, characterization and chromosomal mapping of bacterial artificial chromosome (BAC) library of Yunnan snub-nosed monkey (Rhinopithecus bieti).
by Xu HL, Qian YP, Nie WH, Chi JX, Yang FT, Su B.
Affliation: Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, The Chinese Academy of Sciences, Kunming, China.
Journal: Chromosome Res. 12(3):251-62
Publication Date: Wednesday, May 05, 2004
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A computational tool to simulate correlated activity in neural circuits.
by Veredas FJ, Vico FJ, Alonso JM.
Affliation: Departamento de Lenguajes y Ciencias de la Computación, ETSI Informática, Universidad de Málaga, Bulevar de Louis Pasteur s/n, E-29071 Málaga, Spain. fvn@geb.uma.es
Journal: J Neurosci Methods. 136(1):23-32
Publication Date: Wednesday, May 05, 2004
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Genetic and molecular characterization of a dental pathogen using genome-wide approaches.
by Actis LA, Rhodes ER, Tomaras AP.
Affliation: Department of Microbiology, Miami University, 40 Pearson Hall, Oxford, OH 45056, USA. actisla@muohio.edu
Journal: Adv Dent Res. 17:95-9
Publication Date: Wednesday, May 05, 2004
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