Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets.
by Bloom JD, Adami C.
Affliation: Department of Chemistry and Digital Life Laboratory, 210-41, California Institute of Technology, Pasadena, CA 91125, USA. bloom@caltech.edu
Journal: BMC Evol Biol. 10 2003;3(1):21
Publication Date: Monday, May 10, 2004
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cDNA2Genome: a tool for mapping and annotating cDNAs.
by Del Val C, Glatting KH, Suhai S.
Affliation: Department of Molecular Biophysics, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany. c.delval@dkfz.de
Journal: BMC Bioinformatics. 09 2003;4(1):39
Publication Date: Monday, May 10, 2004
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OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
by Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.
Affliation: School of Life Sciences, University of Dundee, Dow St, Dundee, DD1 5EH, Scotland, UK. raghava@imtech.res.in
Journal: BMC Bioinformatics. 10 2003;4(1):47
Publication Date: Monday, May 10, 2004
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PCAS--a precomputed proteome annotation database resource.
by Zhang Y, Yin Y, Chen Y, Gao G, Yu P, Luo J, Jiang Y.
Affliation: College of Life Sciences, National Laboratory of Genetic Engineering and Protein Engineering, Center of Bioinformatics, Peking University, Beijing 100871, China. zhangy@mail.cbi.pku.edu.cn
Journal: BMC Genomics. 11 2003;4(1):42
Publication Date: Monday, May 10, 2004
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RSEARCH: finding homologs of single structured RNA sequences.
by Klein RJ, Eddy SR.
Affliation: Howard Hughes Medical Institute & Department of Genetics, Washington University School of Medicine, Saint Louis, Missouri 63110, USA. rjklein@linkage.rockefeller.edu
Journal: BMC Bioinformatics. 09 2003;4(1):44
Publication Date: Monday, May 10, 2004
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LEAping to conclusions: a computational reanalysis of late embryogenesis abundant proteins and their possible roles.
by Wise MJ.
Affliation: Department of Genetics, Cambridge University, Cambridge, UK. mw263@cam.ac.uk
Journal: BMC Bioinformatics. 10 2003;4(1):52
Publication Date: Monday, May 10, 2004
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Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases.
by Huminiecki L, Lloyd AT, Wolfe KH.
Affliation: Department of Genetics, Smurfit Institute, University of Dublin Trinity College, Dublin 2, Ireland. huminiel@tcd.ie
Journal: BMC Genomics. 07 2003;4(1):31
Publication Date: Monday, May 10, 2004
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Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.
by Bolser D, Dafas P, Harrington R, Park J, Schroeder M.
Affliation: Department of Computing, City University, London EC1V 0HB, UK. dmb@mrc-dunn.cam.ac.uk
Journal: BMC Bioinformatics. 10 2003;4(1):45
Publication Date: Monday, May 10, 2004
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Conservation of regulatory elements between two species of Drosophila.
by Emberly E, Rajewsky N, Siggia ED.
Affliation: Center for Studies in Physics and Biology, The Rockefeller University, 1230 York Avenue, New York, NY, USA. eemberly@edsc.rockefeller.edu
Journal: BMC Bioinformatics. 11 2003;4(1):57
Publication Date: Monday, May 10, 2004
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PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.
by Pan D, Sun N, Cheung KH, Guan Z, Ma L, Holford M, Deng X, Zhao H.
Affliation: Division of Biostatistics, Yale University, New Haven, CT 06520, USA. deyun.pan@yale.edu
Journal: BMC Bioinformatics. 11 2003;4(1):56
Publication Date: Monday, May 10, 2004
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Eval: a software package for analysis of genome annotations.
by Keibler E, Brent MR.
Affliation: Department of Computer Science and Engineering, Washington University, St, Louis, MO 63130, USA. evan@cse.wustl.edu
Journal: BMC Bioinformatics. 10 2003;4(1):50
Publication Date: Monday, May 10, 2004
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Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data.
by Wang J, Bø TH, Jonassen I, Myklebost O, Hovig E.
Affliation: Department of Tumor Biology, The Norwegian Radium Hospital, N0310 Oslo, Norway. junbaiw@radium.uio.no
Journal: BMC Bioinformatics. 12 2003;4(1):60
Publication Date: Monday, May 10, 2004
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GeneViTo: visualizing gene-product functional and structural features in genomic datasets.
by Vernikos GS, Gkogkas CG, Promponas VJ, Hamodrakas SJ.
Affliation: Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis, 15701, Athens, Greece. gverniko@yahoo.gr
Journal: BMC Bioinformatics. 10 2003;4(1):53
Publication Date: Monday, May 10, 2004
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Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency.
by Nazina AG, Papatsenko DA.
Affliation: Department of Biology, New York University, New York, USA. agn202@nyu.edu
Journal: BMC Bioinformatics. 12 2003;4(1):65
Publication Date: Monday, May 10, 2004
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AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis.
by Badidi E, De Sousa C, Lang BF, Burger G.
Affliation: The Canadian Institute for Advanced Research, Program in Evolutionary Biology, Département de Biochimie, Université de Montréal, 2900, Boul, Edouard Montpetit, Montréal, QC H3T 1J4, Canada. me.badidi@umontreal.ca
Journal: BMC Bioinformatics. 12 2003;4(1):63
Publication Date: Monday, May 10, 2004
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Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.
by Culhane AC, Perrière G, Higgins DG.
Affliation: Department of Biochemistry, Biosciences Institute, University College Cork, Cork, Ireland. Aedin.Culhane@ucd.ie
Journal: BMC Bioinformatics. 11 2003;4(1):59
Publication Date: Monday, May 10, 2004
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Primer on medical genomics. Part XIV: Introduction to systems biology--a new approach to understanding disease and treatment.
by Morel NM, Holland JM, van der Greef J, Marple EW, Clish C, Loscalzo J, Naylor S.
Affliation: Beyond Genomics, Inc, Waltham, Mass, USA.
Journal: Mayo Clin Proc. 79(5):651-8
Publication Date: Monday, May 10, 2004
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Screening genomes of Gram-positive bacteria for double-glycine-motif-containing peptides.
by Dirix G, Monsieurs P, Marchal K, Vanderleyden J, Michiels J.
Affliation: Centre of Microbial and Plant Genetics, K. U. Leuven, Heverlee, Belgium. ESAT-SCD, K. U. Leuven, Heverlee, Belgium.
Journal: Microbiology. 150(Pt 5):1121-6
Publication Date: Monday, May 10, 2004
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Chemogenomics: an emerging strategy for rapid target and drug discovery.
by Bredel M, Jacoby E.
Affliation: Division of Oncology, Stanford University School of Medicine, 269 Campus Drive, CCSR-1110, Stanford, California 94305-5151, USA. mbredel@stanford.edu
Journal: Nat Rev Genet. 5(4):262-75
Publication Date: Friday, May 07, 2004
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Applied bioinformatics for the identification of regulatory elements.
by Wasserman WW, Sandelin A.
Affliation: Centre for Molecular Medicine and Therapeutics and British Columbia Women's and Children's Hospitals, and Department of Medical Genetics, University of British Columbia, Vancouver, British Columbia V5Z 4H4, Canada.
Journal: Nat Rev Genet. 5(4):276-87
Publication Date: Friday, May 07, 2004
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