Making sense of molecular signatures in the immune system.
by Davies NJ, Tadesse MG, Vannucci M, Kikuchi H, Trevino V, Sarti D, Dragoni I, Contestabile A, Zanders E, Falciani F.
Affliation: School of Biosciences, University of Birmingham, Birmingham B15 2TT, UK. f.falciani@bham.ac.at
Journal: Comb Chem High Throughput Screen. 7(3):231-8
Publication Date: Tuesday, May 11, 2004
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Proteomics/genomics and signaling in lymphocytes.
by Wollscheid B, Watts JD, Aebersold R.
Affliation: Institute for Systems Biology, 1441 North 34th Street, Seattle, Washington 98103, USA. bwollscheid@systemsbiology.org
Journal: Curr Opin Immunol. 16(3):337-44
Publication Date: Tuesday, May 11, 2004
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BioBuilder as a database development and functional annotation platform for proteins.
by Navarro JD, Talreja N, Peri S, Vrushabendra BM, Rashmi BP, Padma N, Surendranath V, Jonnalagadda CK, Kousthub PS, Deshpande N, Shanker K, Pandey A.
Affliation: McKusick-Nathans Institute of Genetic Medicine and the Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. dnavarro@jhmi.edu
Journal: BMC Bioinformatics. 04 2004;5(1):43
Publication Date: Tuesday, May 11, 2004
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VisANT: an online visualization and analysis tool for biological interaction data.
by Hu Z, Mellor J, Wu J, DeLisi C.
Affliation: Bioinformatics Program, Boston University, Boston, MA 02215, USA. zjhu@bu.edu
Journal: BMC Bioinformatics. 02 2004;5(1):17
Publication Date: Tuesday, May 11, 2004
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FRAGS: estimation of coding sequence substitution rates from fragmentary data.
by Swart EC, Hide WA, Seoighe C.
Affliation: South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa. estienne@sanbi.ac.za
Journal: BMC Bioinformatics. 01 2004;5(1):8
Publication Date: Tuesday, May 11, 2004
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Data mining and multiparameter analysis of lung surfactant protein genes in bronchopulmonary dysplasia.
by Rova M, Haataja R, Marttila R, Ollikainen V, Tammela O, Hallman M.
Affliation: Department of Paediatrics and Biocenter Oulu, University of Oulu, Oulu, Finland.
Journal: Hum Mol Genet. 04 2004;13(11):1095-104
Publication Date: Tuesday, May 11, 2004
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CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting.
by Bigelow HR, Wenick AS, Wong A, Hobert O.
Affliation: Department of Biochemistry and Molecular Biophysics, Columbia University, College of Physicians and Surgeons, 701 West 168th Street, New York, NY 10032, USA. hrb46@columbia.edu
Journal: BMC Bioinformatics. 03 2004;5(1):27
Publication Date: Tuesday, May 11, 2004
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Computational protein biomarker prediction: a case study for prostate cancer.
by Wagner M, Naik DN, Pothen A, Kasukurti S, Devineni RR, Adam BL, Semmes OJ, Wright GL.
Affliation: Cincinnati Children's Hospital Research Foundation and Department of Biomedical Engineering, University of Cincinnati, Cincinnati, OH 45229, USA. mwagner@cchmc.org
Journal: BMC Bioinformatics. 03 2004;5(1):26
Publication Date: Tuesday, May 11, 2004
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MuTrack: a genome analysis system for large-scale mutagenesis in the mouse.
by Baker EJ, Galloway L, Jackson B, Schmoyer D, Snoddy J.
Affliation: Department of Computer Science, Baylor University, Waco, USA. Erich_Baker@Baylor.edu
Journal: BMC Bioinformatics. 02 2004;5(1):11
Publication Date: Tuesday, May 11, 2004
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An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results.
by Stanislaus R, Jiang LH, Swartz M, Arthur J, Almeida JS.
Affliation: Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, Charleston, South Carolina, USA. stanisrc@musc.edu
Journal: BMC Bioinformatics. 01 2004;5(1):9
Publication Date: Tuesday, May 11, 2004
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Pegasys: software for executing and integrating analyses of biological sequences.
by Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.
Affliation: UBC Bioinformatics Centre, University of British Columbia, Vancouver, British Columbia, Canada. sohrab@bioinformatics.ubc.ca
Journal: BMC Bioinformatics. 04 2004;5(1):40
Publication Date: Tuesday, May 11, 2004
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Consensus structural models for the amino terminal domain of the retrovirus restriction gene Fv1 and the murine leukaemia virus capsid proteins.
by Taylor WR, Stoye JP.
Affliation: Division of Mathematical Biology, National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK. wtaylor@nimr.mrc.ac.uk
Journal: BMC Struct Biol. 01 2004;4(1):1
Publication Date: Tuesday, May 11, 2004
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Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome.
by Mehta P, Casjens S, Krishnaswamy S.
Affliation: Bioinformatics Centre, School of Biotechnology, Madurai Kamaraj University, Madurai-625021, India. mehta_p74@yahoo.com
Journal: BMC Microbiol. 01 2004;4(1):4
Publication Date: Tuesday, May 11, 2004
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Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures.
by Alexandrov V, Gerstein M.
Affliation: Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Ave, New Haven, CT 06511, USA. vadim.alexandrov@yale.edu
Journal: BMC Bioinformatics. 01 2004;5(1):2
Publication Date: Tuesday, May 11, 2004
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HMM Logos for visualization of protein families.
by Schuster-Böckler B, Schultz J, Rahmann S.
Affliation: Department of Mathematics and Computer Science, Freie Universität Berlin, Germany. bendaboots@gmx.de
Journal: BMC Bioinformatics. 01 2004;5(1):7
Publication Date: Tuesday, May 11, 2004
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GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies.
by Zhang B, Schmoyer D, Kirov S, Snoddy J.
Affliation: Graduate School in Genome Science and Technology, University of Tennessee-Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA. zhangb@ornl.gov
Journal: BMC Bioinformatics. 02 2004;5(1):16
Publication Date: Tuesday, May 11, 2004
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Fast and sensitive multiple alignment of large genomic sequences.
by Brudno M, Chapman M, Göttgens B, Batzoglou S, Morgenstern B.
Affliation: Department of Computer Science, Stanford University, Stanford, CA 94305, USA. brudno@cs.stanford.edu
Journal: BMC Bioinformatics. 12 2003;4(1):66
Publication Date: Monday, May 10, 2004
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Characterization of an ankyrin repeat-containing Shank2 isoform (Shank2E) in liver epithelial cells.
by McWilliams RR, Gidey E, Fouassier L, Weed SA, Doctor RB.
Affliation: Department of Medicine, University of Colorado Health Sciences Center, Denver, CO 80439, USA.
Journal: Biochem J. 380(Pt 1):181-91
Publication Date: Monday, May 10, 2004
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PubMatrix: a tool for multiplex literature mining.
by Becker KG, Hosack DA, Dennis G, Lempicki RA, Bright TJ, Cheadle C, Engel J.
Affliation: Gene Expression and Genomics Unit, National Institutes of Health, Baltimore, MD, USA. beckerk@grc.nia.nih.gov
Journal: BMC Bioinformatics. 12 2003;4(1):61
Publication Date: Monday, May 10, 2004
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Conservation and diversity of gene families explored using the CODEHOP strategy in higher plants.
by Morant M, Hehn A, Werck-Reichhart D.
Affliation: Department of Plant Stress Response, Institute of Plant Molecular Biology, CNRS-UPR 2357, Université Louis Pasteur, 28 rue Goethe, 67083 Strasbourg, France. marc.morant@ibmp-ulp.u-strasbg.fr
Journal: BMC Plant Biol. 08 2002;2(1):7
Publication Date: Monday, May 10, 2004
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