Toxicogenomics through the eyes of informatics: conference overview and recommendations.
by Olden K, Call N, Sobral B, Oakes R.
Affliation: National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, North Carolina, USA.
Journal: Environ Health Perspect. 112(7):805-7
Publication Date: Tuesday, May 25, 2004
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A small family of LLS1-related non-heme oxygenases in plants with an origin amongst oxygenic photosynthesizers.
by Gray J, Wardzala E, Yang M, Reinbothe S, Haller S, Pauli F.
Affliation: Department of Biological Sciences, University of Toledo, 2801 West Bancroft Street, Toledo, OH 43606, USA. jgray5@uoft02.utoledo.edu
Journal: Plant Mol Biol. 54(1):39-54
Publication Date: Tuesday, May 25, 2004
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Genetic structure of the purebred domestic dog.
by Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, Malek TB, Johnson GS, DeFrance HB, Ostrander EA, Kruglyak L.
Affliation: Division of Human Biology, Fred Hutchinson Cancer Research Center, Post Office Box 19024, 1100 Fairview Avenue North, D4-100, Seattle, WA 98109-1024, USA.
Journal: Science. 304(5674):1160-4
Publication Date: Monday, May 24, 2004
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Mutational analysis of the tyrosine phosphatome in colorectal cancers.
by Wang Z, Shen D, Parsons DW, Bardelli A, Sager J, Szabo S, Ptak J, Silliman N, Peters BA, van der Heijden MS, Parmigiani G, Yan H, Wang TL, Riggins G, Powell SM, Willson JK, Markowitz S, Kinzler KW, Vogelstein B, Velculescu VE.
Affliation: Sidney Kimmel Comprehensive Cancer Center, Howard Hughes Medical Institute, Johns Hopkins University Medical Institutions, Baltimore, MD 21231, USA.
Journal: Science. 304(5674):1164-6
Publication Date: Monday, May 24, 2004
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[Expert system for the diagnosis of thyroid neoplasms]
by Rotin DL, Petrovichev NN, Pavlovskaia AI, Nikitaev VG, Berdnikovich EIu, Pronichev AN, Popov DA.
Affliation: Research Institute of Clinical Oncology, N.N. Blokhin Russian Cancer Research Centre, 115478, Moscow.
Journal: Arkh Patol. 2004 Mar-Apr;66(2):47-51
Publication Date: Monday, May 24, 2004
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Quantitative analysis of highly parallel transfection in cell microarrays.
by Baghdoyan S, Roupioz Y, Pitaval A, Castel D, Khomyakova E, Papine A, Soussaline F, Gidrol X.
Affliation: Service de Génomique Fonctionnelle CEA, 2 Rue Gaston Crémieux CP22, 91057 Evry Cedex, France.
Journal: Nucleic Acids Res. 05 2004;32(9):e77
Publication Date: Monday, May 24, 2004
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eL-DASionator: an LDAS upload file generator.
by Negre V, Grunau C.
Affliation: Institut de G?énétique Humaine, CNRS UPR 1142, 141 rue de la Cardonille, 34396 Montpellier, France. developer@methdb.net
Journal: BMC Bioinformatics. 05 2004;5(1):55
Publication Date: Monday, May 24, 2004
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A combined computational-experimental approach predicts human microRNA targets.
by Kiriakidou M, Nelson PT, Kouranov A, Fitziev P, Bouyioukos C, Mourelatos Z, Hatzigeorgiou A.
Affliation: Department of Pathology, School of Medicine, Center for Bioinformatics, and Computer and Information Science, School of Engineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Journal: Genes Dev. 05 2004;18(10):1165-78
Publication Date: Monday, May 24, 2004
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Cellware--a multi-algorithmic software for computational systems biology.
by Dhar P, Meng TC, Somani S, Ye L, Sairam A, Chitre M, Hao Z, Sakharkar K.
Affliation: Systems Biology Group, Bioinformatics Institute, 30 Biopolis Street, No. #07-01 Matrix Building, Singapore 138671. pk@bii.a-star.edu.sg
Journal: Bioinformatics. 02 2004;20(8):1319-21
Publication Date: Monday, May 24, 2004
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Structural characterization of genomes by large scale sequence-structure threading.
by Cherkasov A, Jones SJ.
Affliation: Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada. artc@interchange.ubc.ca
Journal: BMC Bioinformatics. 04 2004;5(1):37
Publication Date: Monday, May 24, 2004
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Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function.
by Goonesekere NC, Lee B.
Affliation: Laboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Building 37, Room 5120, 37 Convent Drive MSC 4264, Bethesda, MD 20892-4264, USA.
Journal: Nucleic Acids Res. 05 2004;32(9):2838-43
Publication Date: Monday, May 24, 2004
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Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes.
by Kreiman G.
Affliation: Center for Biological and Computational Learning, McGovern Institute for Brain Research, Massachusetts Institute of Technology, 45 Carleton Street, MIT E25-201B, Cambridge, MA 02142, USA. kreiman@mit.edu
Journal: Nucleic Acids Res. 05 2004;32(9):2889-900
Publication Date: Monday, May 24, 2004
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Expressed sequence tags: analysis and annotation.
by Parkinson J, Blaxter M.
Affliation: Institute of Cell, Animal, and Population Biology, Ashworth Laboratories, University of Edinburgh, UK.
Journal: Methods Mol Biol. 270:93-126
Publication Date: Friday, May 21, 2004
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Bioinformatic analyses of the bacterial L-ascorbate phosphotransferase system permease family.
by Hvorup R, Chang AB, Saier MH.
Affliation: Division of Biological Sciences, University of California at San Diego, La Jolla, Calif, USA.
Journal: J Mol Microbiol Biotechnol. 6(3-4):191-205
Publication Date: Friday, May 21, 2004
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Microsatellites: simple sequences with complex evolution.
by Ellegren H.
Affliation: Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden. Hans.Ellegren@ebc.uu.se
Journal: Nat Rev Genet. 5(6):435-45
Publication Date: Friday, May 21, 2004
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A Kazal prolyl endopeptidase inhibitor isolated from the skin of Phyllomedusa sauvagii.
by Gebhard LG, Carrizo FU, Stern AL, Burgardt NI, Faivovich J, Lavilla E, Ermácora MR.
Affliation: Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 180 (B1876BXD), Bernal, Argentina.
Journal: Eur J Biochem. 271(11):2117-26
Publication Date: Friday, May 21, 2004
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Globally distributed object identification for biological knowledgebases.
by Clark T, Martin S, Liefeld T.
Affliation: tim.clark@acm.org
Journal: Brief Bioinform. 5(1):59-70
Publication Date: Friday, May 21, 2004
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Tutorial section: domains and motifs - proteins in bite-sized chunks.
by Mullan L.
Affliation: MRC Rosalind Franklin Centre for Genomics Research (formerly HGMP-RC), Genome Campus, Hinxton, Cambridge CB10 1SB, UK. lmullan@hrfcgr.mrc.ac.uk
Journal: Brief Bioinform. 5(1):71-4
Publication Date: Friday, May 21, 2004
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Random screening of proteins for HLA-A*0201-binding nine-amino acid peptides is not sufficient for identifying CD8 T cell epitopes recognized in the context of HLA-A*0201.
by Pelte C, Cherepnev G, Wang Y, Schoenemann C, Volk HD, Kern F.
Affliation: Institut für Medizinische Immunologie der Charité, Humboldt-Universität zu Berlin (Charité), Campus Charité Mitte, Berlin, Germany.
Journal: J Immunol. 172(11):6783-9
Publication Date: Friday, May 21, 2004
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Theoretical study of the vinyl allene oxide to cyclopent-2-en-1-one rearrangement: mechanism, torquoselectivity and solvent effects.
by Silva López C, Nieto Faza O, York DM, de Lera AR.
Affliation: Departamento de Química Orgánica, Universidade de Vigo, 36200 Vigo, Spain.
Journal: J Org Chem. 69(11):3635-44
Publication Date: Friday, May 21, 2004
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