Multiplexing schemes for generic SNP genotyping assays.
by Sharan R, Ben-Dor A, Yakhini Z.
Affliation: International Computer Science Institute, 1947 Center St., Berkeley, CA 94704, USA. roded@icsi.berkeley.edu
Journal: Pac Symp Biocomput. :140-51
Publication Date: Tuesday, March 02, 2004
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Haplotype block definition and its application.
by Zhu X, Zhang S, Kan D, Cooper R.
Affliation: Department of Preventive Medicine and Epidemiology, Loyola University Stritch School of Medicine, Maywood, IL 60153, USA.
Journal: Pac Symp Biocomput. :152-63
Publication Date: Tuesday, March 02, 2004
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Part-of relations in anatomy ontologies: a proposal for RDFS and OWL formalisations.
by Aitken JS, Webber BL, Bard JB.
Affliation: School of Informatics, University of Edinburgh, Appleton Tower, Crichton St., Edinburgh EH8 9LE.
Journal: Pac Symp Biocomput. :166-77
Publication Date: Tuesday, March 02, 2004
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Building mouse phenotype ontologies.
by Gkoutos GV, Green EC, Mallon AM, Hancock JM, Davidson D.
Affliation: MRC UK Mouse Genome Centre and Mammalian Genetics Unit, Harwell, Oxfordshire, England. g.gkoutos@har.mrc.ac.uk
Journal: Pac Symp Biocomput. :178-89
Publication Date: Tuesday, March 02, 2004
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An evidence ontology for use in pathway/genome databases.
by Karp PD, Paley S, Krieger CJ, Zhang P.
Affliation: SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, USA. pkarp@ai.sri.com
Journal: Pac Symp Biocomput. :190-201
Publication Date: Tuesday, March 02, 2004
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The compositional structure of Gene Ontology terms.
by Ogren PV, Cohen KB, Acquaah-Mensah GK, Eberlein J, Hunter L.
Affliation: University of Colorado at Boulder, Dept. of Computer Science, Boulder, CO, USA.
Journal: Pac Symp Biocomput. :214-25
Publication Date: Tuesday, March 02, 2004
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The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures.
by Xing Y, Resch A, Lee C.
Affliation: UCLA-DOE Center for Genomics and Proteomics, Molecular Biology Institute and Department of Chemistry & Biochemistry, University of California, Los Angeles, Los Angeles, California 90095-1570, USA.
Journal: Genome Res. 02 2004;14(3):426-41
Publication Date: Tuesday, March 02, 2004
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Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics.
by Rise ML, von Schalburg KR, Brown GD, Mawer MA, Devlin RH, Kuipers N, Busby M, Beetz-Sargent M, Alberto R, Gibbs AR, Hunt P, Shukin R, Zeznik JA, Nelson C, Jones SR, Smailus DE, Jones SJ, Schein JE, Marra MA, Butterfield YS, Stott JM, Ng SH, Davidson WS, Koop BF.
Affliation: Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5 Canada.
Journal: Genome Res. 02 2004;14(3):478-90
Publication Date: Tuesday, March 02, 2004
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Geometric analysis of cross-linkability for protein fold discrimination.
by Potluri S, Khan AA, Kuzminykh A, Bujnicki JM, Friedman AM, Bailey-Kellogg C.
Affliation: Dept of Comp. Sci., Purdue Univ., West Lafayette, IN 47907, USA.
Journal: Pac Symp Biocomput. :447-58
Publication Date: Tuesday, March 02, 2004
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Protein fold recognition through application of residual dipolar coupling data.
by Qu Y, Guo JT, Olman V, Xu Y.
Affliation: Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.
Journal: Pac Symp Biocomput. :459-70
Publication Date: Tuesday, March 02, 2004
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Combining text mining and sequence analysis to discover protein functional regions.
by Eskin E, Agichtein E.
Affliation: School of Computer Science Engineering, Hebrew University. eeskin@cs.huji.ac.il
Journal: Pac Symp Biocomput. :288-99
Publication Date: Tuesday, March 02, 2004
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Kernel-based data fusion and its application to protein function prediction in yeast.
by Lanckriet GR, Deng M, Cristianini N, Jordan MI, Noble WS.
Affliation: Division of Electrical Engineering, University of California, Berkeley, USA.
Journal: Pac Symp Biocomput. :300-11
Publication Date: Tuesday, March 02, 2004
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Discovery of binding motif pairs from protein complex structural data and protein interaction sequence data.
by Li H, Li J, Tan SH, Ng SK.
Affliation: Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613. haiquan@i2r.a-star.edu.sg
Journal: Pac Symp Biocomput. :312-23
Publication Date: Tuesday, March 02, 2004
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Phylogenetic motif detection by expectation-maximization on evolutionary mixtures.
by Moses AM, Chiang DY, Eisen MB.
Affliation: Graduate Group in Biophysics, Center for Integrative Genomics, University of California, Berkeley, USA. amoses@ocf.berkeley.edu
Journal: Pac Symp Biocomput. :324-35
Publication Date: Tuesday, March 02, 2004
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Identifying good predictions of RNA secondary structure.
by Nebel ME.
Affliation: Johann Wolfgang Goethe-Universit?ät, Institut für Informatik, 60325 Frankfurt am Main, Germany.
Journal: Pac Symp Biocomput. :423-34
Publication Date: Tuesday, March 02, 2004
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Exploring bias in the Protein Data Bank using contrast classifiers.
by Peng K, Obradovic Z, Vucetic S.
Affliation: Center for Information Science and Technology, Temple University, 1805 N Broad St, Philadelphia, PA 19122, USA.
Journal: Pac Symp Biocomput. :435-46
Publication Date: Tuesday, March 02, 2004
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Defaults, context, and knowledge: alternatives for OWL-indexed knowledge bases.
by Rector A.
Affliation: Bio-Health Informatics Group, Department of Computer Science, University of Manchester, Manchester M13 9PL, UK. rector@cs.man.ac.uk
Journal: Pac Symp Biocomput. :226-37
Publication Date: Tuesday, March 02, 2004
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Investigating implicit knowledge in ontologies with application to the anatomical domain.
by Zhang S, Bodenreider O.
Affliation: U.S. National Library of Medicine, 8600 Rockville Pike, MS 43, Bethesda, Maryland 20894, USA. szhang@nlm.nih.gov
Journal: Pac Symp Biocomput. :250-61
Publication Date: Tuesday, March 02, 2004
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Progress: simultaneous searching of protein databases by sequence and structure.
by Bhattacharya A, Can T, Kahveci T, Singh AK, Wang YF.
Affliation: Department of Computer Science, University of California, Santa Barbara, CA 93106, USA. arnab@cs.ucsb.edu
Journal: Pac Symp Biocomput. :264-75
Publication Date: Tuesday, March 02, 2004
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Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information.
by De Hoon MJ, Imoto S, Kobayashi K, Ogasawara N, Miyano S.
Affliation: Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.
Journal: Pac Symp Biocomput. :276-87
Publication Date: Tuesday, March 02, 2004
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