Geometric analysis of cross-linkability for protein fold discrimination.
by Potluri S, Khan AA, Kuzminykh A, Bujnicki JM, Friedman AM, Bailey-Kellogg C.
Affliation: Dept of Comp. Sci., Purdue Univ., West Lafayette, IN 47907, USA.
Journal: Pac Symp Biocomput. :447-58
Publication Date: Tuesday, March 02, 2004
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Protein fold recognition through application of residual dipolar coupling data.
by Qu Y, Guo JT, Olman V, Xu Y.
Affliation: Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.
Journal: Pac Symp Biocomput. :459-70
Publication Date: Tuesday, March 02, 2004
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Design of a high-throughput assay for alternative splicing using polymerase colonies.
by Buhler JD, Souvenir RM, Zhang W, Mitra RD.
Affliation: Department of Computer Science and Engineering, Washington University, One Brookings Drive, St. Louis, MO 63130, USA. jbuhler@cse.wustl.edu
Journal: Pac Symp Biocomput. :5-16
Publication Date: Tuesday, March 02, 2004
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The effects of alternative splicing on transmembrane proteins in the mouse genome.
by Cline MS, Shigeta R, Wheeler RL, Siani-Rose MA, Kulp D, Loraine AE.
Affliation: Affymetrix Inc., 6550 Vallejo Street, Suite 100, Emeryville, CA 94608, USA.
Journal: Pac Symp Biocomput. :17-28
Publication Date: Tuesday, March 02, 2004
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Genome-wide detection of alternative splicing in expressed sequences using partial order multiple sequence alignment graphs.
by Grasso C, Modrek B, Xing Y, Lee C.
Affliation: Department of Chemistry and Biochemistry, University of California, 611 Charles E. Young Drive East, Los Angeles, CA 90095-1570, USA.
Journal: Pac Symp Biocomput. :29-41
Publication Date: Tuesday, March 02, 2004
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Detection of novel splice forms in human and mouse using cross-species approach.
by Kan Z, Castle J, Johnson JM, Tsinoremas NF.
Affliation: Rosetta Inpharmatics, 12040 115th Ave. N.E., Kirkland, WA 98034, USA. zhengyan_kan@merck.com
Journal: Pac Symp Biocomput. :42-53
Publication Date: Tuesday, March 02, 2004
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Protein structure and fold prediction using tree-augmented naive Bayesian classifier.
by Chinnasamy A, Sung WK, Mittal A.
Affliation: Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543. arun@ksung.comp.nus.edu.sg
Journal: Pac Symp Biocomput. :387-98
Publication Date: Tuesday, March 02, 2004
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Clustering protein sequence and structure space with infinite Gaussian mixture models.
by Dubey A, Hwang S, Rangel C, Rasmussen CE, Ghahramani Z, Wild DL.
Affliation: Keck Graduate Institute, 535 Watson Drive, Claremont, CA 91711, USA.
Journal: Pac Symp Biocomput. :399-410
Publication Date: Tuesday, March 02, 2004
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Accurate classification of protein structural families using coherent subgraph analysis.
by Huan J, Wang W, Washington A, Prins J, Shah R, Tropsha A.
Affliation: Department of Computer Science, School of Pharmacy, University of North Carolina, Chapel Hill, NC 27599, USA.
Journal: Pac Symp Biocomput. :411-22
Publication Date: Tuesday, March 02, 2004
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A mixed integer linear programming (MILP) framework for inferring time delay in gene regulatory networks.
by Dasika MS, Gupta A, Maranas CD.
Affliation: Department of Chemical Engineering, The Pennsylvania State University, University Park, PA 16802, USA. msd179@psu.edu
Journal: Pac Symp Biocomput. :474-85
Publication Date: Tuesday, March 02, 2004
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Robust identification of large genetic networks.
by Di Bernardo D, Gardner TS, Collins JJ.
Affliation: TIGEM, Via P Castellino 111, 80131 Naples, Italy. dibernardo@tigem.it
Journal: Pac Symp Biocomput. :486-97
Publication Date: Tuesday, March 02, 2004
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Modeling gene expression from microarray expression data with state-space equations.
by Wu FX, Zhang WJ, Kusalik AJ.
Affliation: Division of Biomedical Engineering, University of Saskatchewan, 57 Campus Dr., Saskatoon, SK, S7N 5A9, Canada. faw341@mail.usask.ca
Journal: Pac Symp Biocomput. :581-92
Publication Date: Tuesday, March 02, 2004
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Reconstructing chain functions in genetic networks.
by Gat-Viks I, Shamir R, Karp RM, Sharan R.
Affliation: School of Computer Science, Tel-Aviv University, Tel-Aviv 69978, Israel. iritg@tau.ac.il
Journal: Pac Symp Biocomput. :498-509
Publication Date: Tuesday, March 02, 2004
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Inferring gene regulatory networks from raw data--a molecular epistemics approach.
by Kightley DA, Chandra N, Elliston K.
Affliation: Genstruct Inc., 125 Cambridgepark Drive, Cambridge, MA 01702, USA.
Journal: Pac Symp Biocomput. :510-20
Publication Date: Tuesday, March 02, 2004
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A BioSpi model of lymphocyte-endothelial interactions in inflamed brain venules.
by Lecca P, Priami C, Laudanna C, Constantin G.
Affliation: Dipartimento di Informatica e Telecomunicazioni, Universit di Trento. lecca@science.unitn.it
Journal: Pac Symp Biocomput. :521-32
Publication Date: Tuesday, March 02, 2004
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Symbolic inference of xenobiotic metabolism.
by McShan DC, Updadhayaya M, Shah I.
Affliation: School of Medicine, University of Colorado, 4200 East 9th Avenue, B-119, Denver, CO 80262, USA. daniel.mcshan@uchsc.edu
Journal: Pac Symp Biocomput. :545-56
Publication Date: Tuesday, March 02, 2004
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Finding optimal models for small gene networks.
by Ott S, Imoto S, Miyano S.
Affliation: Human Genome Center, Institute of Medical Science, The University of Tokyo 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan. ott@ims.u-tokyo.ac.jp
Journal: Pac Symp Biocomput. :557-67
Publication Date: Tuesday, March 02, 2004
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Pathway logic modeling of protein functional domains in signal transduction.
by Talcott C, Eker S, Knapp M, Lincoln P, Laderoute K.
Affliation: SRI International, 333 Ravenswood Avenue, Menlo Park CA 94025, USA. ctalcott@sri.com
Journal: Pac Symp Biocomput. :568-80
Publication Date: Tuesday, March 02, 2004
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Comparative analysis of protein domain organization.
by Ye Y, Godzik A.
Affliation: Program in Bioinformatics and Systems Biology, The Burnham Institute, La Jolla, California 92037, USA. yy3@burnham.org
Journal: Genome Res. 14(3):343-53
Publication Date: Tuesday, March 02, 2004
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Contributions of amino acid side chains to the kinetics and thermodynamics of the bivalent binding of protein L to Ig kappa light chain.
by Svensson HG, Wedemeyer WJ, Ekstrom JL, Callender DR, Kortemme T, Kim DE, Sjöbring U, Baker D.
Affliation: Lund University, BMC B14, Tornav?ägen 10, S-22184 Lund, Sweden.
Journal: Biochemistry. 43(9):2445-57
Publication Date: Tuesday, March 02, 2004
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