Multicellular simulation predicts microvascular patterning and in silico tissue assembly.
by Peirce SM, Van Gieson EJ, Skalak TC.
Affliation: Department of Biomedical Engineering, University of Virginia Health System, Charlottesville, Virginia, USA.
Journal: FASEB J. 02 2004;18(6):731-3
Publication Date: Wednesday, March 31, 2004
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Characterization of genomic organization of the adenosine A2A receptor gene by molecular and bioinformatics analyses.
by Yu L, Frith MC, Suzuki Y, Peterfreund RA, Gearan T, Sugano S, Schwarzschild MA, Weng Z, Fink JS, Chen JF.
Affliation: Department of Neurology, Boston University School of Medicine, 715 Albany Street, Boston, MA 02118, USA.
Journal: Brain Res. 1000(1-2):156-73
Publication Date: Wednesday, March 31, 2004
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The conformation and movement of Na channel inactivation gate peptide in linker between domain III and IV during inactivation by NMR spectroscopy and molecular modeling study.
by Lou BS, Lin TH, Lo CZ.
Affliation: Chemistry Division, Center of General Education, Chang Gung University, Tao-Yuan, Taiwan. blou@mail.cgu.edu.tw
Journal: J Pept Res. 63(3):313-23
Publication Date: Tuesday, March 30, 2004
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Structural interpretation of pH and salt-dependent processes in proteins with computational methods.
by García-Moreno E B, Fitch CA.
Affliation: Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA.
Journal: Methods Enzymol. 380:20-51
Publication Date: Tuesday, March 30, 2004
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ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
by Neuvirth H, Raz R, Schreiber G.
Affliation: Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100 Israel.
Journal: J Mol Biol. 338(1):181-99
Publication Date: Tuesday, March 30, 2004
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Computational redesign of protein-protein interaction specificity.
by Kortemme T, Joachimiak LA, Bullock AN, Schuler AD, Stoddard BL, Baker D.
Affliation: Howard Hughes Medical Institute & Department of Biochemistry, Box 357350, University of Washington, Seattle, Washington 98195-7350, USA.
Journal: Nat Struct Mol Biol. 03 2004;11(4):371-9
Publication Date: Monday, March 29, 2004
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Functional and topological characterization of protein interaction networks.
by Yook SH, Oltvai ZN, Barabási AL.
Affliation: Department of Physics, University of Notre Dame, Notre Dame, IN 46556, USA.
Journal: Proteomics. 4(4):928-42
Publication Date: Monday, March 29, 2004
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The modal distribution of protein isoelectric points reflects amino acid properties rather than sequence evolution.
by Weiller GF, Caraux G, Sylvester N.
Affliation: ARC Centre of Excellence for Integrative Legume Research, Australian National University, Canberra, Australia. gweiller@rsbs.anu.edu.au
Journal: Proteomics. 4(4):943-9
Publication Date: Monday, March 29, 2004
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Improving large-scale proteomics by clustering of mass spectrometry data.
by Beer I, Barnea E, Ziv T, Admon A.
Affliation: IBM Haifa Research Lab, Haifa, Israel. beer@il.ibm.com
Journal: Proteomics. 4(4):950-60
Publication Date: Monday, March 29, 2004
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A computational method for assessing peptide- identification reliability in tandem mass spectrometry analysis with SEQUEST.
by Razumovskaya J, Olman V, Xu D, Uberbacher EC, VerBerkmoes NC, Hettich RL, Xu Y.
Affliation: Life Sciences Division, Oak Ridge National Laboratory, TN, USA.
Journal: Proteomics. 4(4):961-9
Publication Date: Monday, March 29, 2004
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Global analysis of bacterial transcription factors to predict cellular target processes.
by Doerks T, Andrade MA, Lathe W, von Mering C, Bork P.
Affliation: EMBL, 69117 Heidelberg, Meyerhofstr 1, Germany. doerks@email.de
Journal: Trends Genet. 20(3):126-31
Publication Date: Monday, March 29, 2004
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Long live structural biology.
by Stevens RC.
Affliation: Department of Molecular Biology and Chemistry at the Scripps Research Institute, La Jolla, California 92037, USA. stevens@scripps.edu
Journal: Nat Struct Mol Biol. 11(4):293-5
Publication Date: Monday, March 29, 2004
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Candidate genes for nicotine dependence via linkage, epistasis, and bioinformatics.
by Sullivan PF, Neale BM, van den Oord E, Miles MF, Neale MC, Bulik CM, Joyce PR, Straub RE, Kendler KS.
Affliation: Virginia Institute for Psychiatric & Behavioral Genetics, Virginia Commonwealth University, VA, USA. pfsulliv@hsc.vcu.edu
Journal: Am J Med Genet. 126B(1):23-36
Publication Date: Monday, March 29, 2004
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GEMDOCK: a generic evolutionary method for molecular docking.
by Yang JM, Chen CC.
Affliation: Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan. moon@cc.nctu.edu.tw
Journal: Proteins. 55(2):288-304
Publication Date: Monday, March 29, 2004
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A hierarchical approach to all-atom protein loop prediction.
by Jacobson MP, Pincus DL, Rapp CS, Day TJ, Honig B, Shaw DE, Friesner RA.
Affliation: Department of Pharmaceutical Chemistry, University of California, San Francisco 94143-2240, USA. matt@cgl.ucsf.edu
Journal: Proteins. 55(2):351-67
Publication Date: Monday, March 29, 2004
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High-resolution prediction of protein helix positions and orientations.
by Li X, Jacobson MP, Friesner RA.
Affliation: Department of Chemistry, Columbia University, New York, New York, USA.
Journal: Proteins. 55(2):368-82
Publication Date: Monday, March 29, 2004
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Progressive combinatorial algorithm for multiple structural alignments: application to distantly related proteins.
by Ochagavía ME, Wodak S.
Affliation: Center for Genetic Engineering and Biotechnology, Cubanacán, La Habana, Cuba.
Journal: Proteins. 55(2):436-54
Publication Date: Monday, March 29, 2004
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Microbial genomes have over 72% structure assignment by the threading algorithm PROSPECTOR_Q.
by Kihara D, Skolnick J.
Affliation: UB Center of Excellence in Bioinformatics, University at Buffalo, Buffalo, New York 14215, USA.
Journal: Proteins. 55(2):464-73
Publication Date: Monday, March 29, 2004
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Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition.
by Chou KC, Cai YD.
Affliation: Gordon Life Science Institute, Torrey Del Mar Drive, San Diego, California 92130, USA. lifescience@san.rr.com
Journal: J Cell Biochem. 91(6):1197-203
Publication Date: Monday, March 29, 2004
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From data to knowledge.
by Ascoli GA.
Affliation:
Journal: Neuroinformatics. 1(2):145-7
Publication Date: Monday, March 29, 2004
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