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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - February, 2004

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A SNP map of the rat genome generated from cDNA sequences.
by Zimdahl H, Nyakatura G, Brandt P, Schulz H, Hummel O, Fartmann B, Brett D, Droege M, Monti J, Lee YA, Sun Y, Zhao S, Winter EE, Ponting CP, Chen Y, Kasprzyk A, Birney E, Ganten D, Hubner N.
Affliation: Max-Delbruck-Center for Molecular Medicine (MDC), Robert-Rossle-Str. 10, 13092 Berlin-Buch, Germany.
Journal: Science. 303(5659):807
Publication Date: Friday, February 06, 2004
PubMed citation

Global mapping of the yeast genetic interaction network.
by Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, Young J, Berriz GF, Brost RL, Chang M, Chen Y, Cheng X, Chua G, Friesen H, Goldberg DS, Haynes J, Humphries C, He G, Hussein S, Ke L, Krogan N, Li Z, Levinson JN, Lu H, Ménard P, Munyana C, Parsons AB, Ryan O, Tonikian R, Roberts T, Sdicu AM, Shapiro J, Sheikh B, Suter B, Wong SL, Zhang LV, Zhu H, Burd CG, Munro S, Sander C, Rine J, Greenblatt J, Peter M, Bretscher A, Bell G, Roth FP, Brown GW, Andrews B, Bussey H, Boone C.
Affliation: Banting and Best Department of Medical Research, University of Toronto, Toronto, ON, Canada M5G 1L6.
Journal: Science. 303(5659):808-13
Publication Date: Friday, February 06, 2004
PubMed citation

Genetics. Robust interactions.
by Hartwell L.
Affliation: Department of Genetics, University of Washington, Seattle, WA 98195, USA. lhartwel@fhcrc.org
Journal: Science. 303(5659):774-5
Publication Date: Friday, February 06, 2004
PubMed citation

Introductory science and mathematics education for 21st-Century biologists.
by Bialek W, Botstein D.
Affliation: Department of Physics, Princeton University, Princeton, NJ 08544, USA.
Journal: Science. 303(5659):788-90
Publication Date: Friday, February 06, 2004
PubMed citation

Uses and abuses of mathematics in biology.
by May RM.
Affliation: Zoology Department, Oxford University, Oxford OX1 3PS, UK.
Journal: Science. 303(5659):790-3
Publication Date: Friday, February 06, 2004
PubMed citation

Applications of microarrays to histopathology.
by van de Rijn M, Gilks CB.
Affliation: Department of Pathology, Stanford University Medical Center, Stanford, CA 94305, USA. mrijn@stanford.edu
Journal: Histopathology. 44(2):97-108
Publication Date: Friday, February 06, 2004
PubMed citation

The impact of thymic antigen diversity on the size of the selected T cell repertoire.
by Faro J, Velasco S, González-Fernández A, Bandeira A.
Affliation: Departamento de Física Aplicada, Universidad de Salamanca, Salamanca, Spain. jfaro@igc.gulbenkian.pt
Journal: J Immunol. 172(4):2247-55
Publication Date: Friday, February 06, 2004
PubMed citation

High-throughput protein analysis integrating bioinformatics and experimental assays.
by del Val C, Mehrle A, Falkenhahn M, Seiler M, Glatting KH, Poustka A, Suhai S, Wiemann S.
Affliation: Division of Molecular Biophysics, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany. c.delval@dkfz.de
Journal: Nucleic Acids Res. 02 2004;32(2):742-8
Publication Date: Thursday, February 05, 2004
PubMed citation

A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
by Bulyk ML, McGuire AM, Masuda N, Church GM.
Affliation: Harvard University Graduate Biophysics Program, Harvard Medical School, Boston, Massachusetts 02115, USA.
Journal: Genome Res. 14(2):201-8
Publication Date: Thursday, February 05, 2004
PubMed citation

A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q.
by Yamada Y, Watanabe H, Miura F, Soejima H, Uchiyama M, Iwasaka T, Mukai T, Sakaki Y, Ito T.
Affliation: Division of Genome Biology, Cancer Research Institute, Kanazawa University, Kanazawa 920-0934, Japan.
Journal: Genome Res. 14(2):247-66
Publication Date: Thursday, February 05, 2004
PubMed citation

From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli.
by Mori H.
Affliation: Research and Education Center of Genetic Information, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan. hmori@gtc.aist-nara.ac.jp
Journal: J Biochem Mol Biol. 37(1):83-92
Publication Date: Thursday, February 05, 2004
PubMed citation



Genome-derived vaccines.
by De Groot AS, Rappuoli R.
Affliation: TB/HIV Research Laboratory, Brown University, Providence, RI 20903, USA. Anne_DeGroot@Brown.edu
Journal: Expert Rev Vaccines. 3(1):59-76
Publication Date: Thursday, February 05, 2004
PubMed citation

Protein-protein interaction networks: from interactions to networks.
by Cho S, Park SG, Lee do H, Park BC.
Affliation: Laboratory of Proteome Analysis, Korea Research Institute of Bioscience and Biotechnology, P.O. Box 115, Yusong, Daejeon 305-600, South Korea. scho@kribb.re.kr
Journal: J Biochem Mol Biol. 37(1):45-52
Publication Date: Thursday, February 05, 2004
PubMed citation

Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci.
by Chapman MA, Donaldson IJ, Gilbert J, Grafham D, Rogers J, Green AR, Göttgens B.
Affliation: Cambridge Institute for Medical Research, Cambridge, CB2 2XY, UK.
Journal: Genome Res. 01 2004;14(2):313-8
Publication Date: Thursday, February 05, 2004
PubMed citation

Flux coupling analysis of genome-scale metabolic network reconstructions.
by Burgard AP, Nikolaev EV, Schilling CH, Maranas CD.
Affliation: Department of Chemical Engineering, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Journal: Genome Res. 01 2004;14(2):301-12
Publication Date: Thursday, February 05, 2004
PubMed citation

Chemical genomics and medicinal systems biology: chemical control of genomic networks in human systems biology for innovative medicine.
by Kim TK.
Affliation: Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea. tkkim@kaist.ac.kr
Journal: J Biochem Mol Biol. 37(1):53-8
Publication Date: Thursday, February 05, 2004
PubMed citation

Bioinformatics in the post-genome era.
by Yu U, Lee SH, Kim YJ, Kim S.
Affliation: National Genome Information Center, Korea Research Institute of Bioscience Biotechnology, Daejeon 305-333, Korea.
Journal: J Biochem Mol Biol. 37(1):75-82
Publication Date: Thursday, February 05, 2004
PubMed citation

A novel method for GPCR recognition and family classification from sequence alone using signatures derived from profile hidden Markov models.
by Papasaikas PK, Bagos PG, Litou ZI, Hamodrakas SJ.
Affliation: Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis, Athens 157 01, Greece.
Journal: SAR QSAR Environ Res. 2003 Oct-Dec;14(5-6):413-20
Publication Date: Wednesday, February 04, 2004
PubMed citation

OQAFMA Querying agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks.
by Mork P, Brinkley JF, Rosse C.
Affliation: Department of Biological Structure, University of Washington, Seattle, WA 98195, USA. pmork@cs.washington.edu
Journal: J Biomed Inform. 36(6):501-17
Publication Date: Wednesday, February 04, 2004
PubMed citation

Snake venomics: characterization of protein families in Sistrurus barbouri venom by cysteine mapping, N-terminal sequencing, and tandem mass spectrometry analysis.
by Juárez P, Sanz L, Calvete JJ.
Affliation: Instituto de Biomedicina de Valencia, C.S.I.C., Valencia, Spain.
Journal: Proteomics. 4(2):327-38
Publication Date: Wednesday, February 04, 2004
PubMed citation

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