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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - February, 2004

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Mining core histone sequences from public protein databases.
by Sullivan SA, Landsman D.
Affliation: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
Journal: Methods Enzymol. 375:3-20
Publication Date: Wednesday, February 11, 2004
PubMed citation

1-Thioangelicin: crystal structure, computer-aided studies and photobiological activity.
by Vedaldi D, Dolmella A, Moro S, Miolo G, Viola G, Caffieri S, Dall'Acqua F.
Affliation: Department of Pharmaceutical Sciences, University of Pada Via F. Marzolo 5, Padua 35131, Italy. daniela.vedaldi@unipd.it
Journal: Farmaco. 59(2):125-32
Publication Date: Wednesday, February 11, 2004
PubMed citation

Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries.
by Blazewicz J, Formanowicz P, Kasprzak M, Markiewicz WT, Swiercz A.
Affliation: Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704 Poznan, Poland.
Journal: Comput Biol Chem. 28(1):11-9
Publication Date: Wednesday, February 11, 2004
PubMed citation

Blasting into the microworld of tissue proteomics: a new window on cancer.
by Geho DH, Petricoin EF, Liotta LA.
Affliation: Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, Rm 2A33, 10 Center Drive, Building 10, Bethesda, MD 20892, USA.
Journal: Clin Cancer Res. 10(3):825-7
Publication Date: Wednesday, February 11, 2004
PubMed citation

Protein profiling in brain tumors using mass spectrometry: feasibility of a new technique for the analysis of protein expression.
by Schwartz SA, Weil RJ, Johnson MD, Toms SA, Caprioli RM.
Affliation: Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Journal: Clin Cancer Res. 10(3):981-7
Publication Date: Wednesday, February 11, 2004
PubMed citation

The metabolic world of Escherichia coli is not small.
by Arita M.
Affliation: Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, Japan. arita@k.u-tokyo.ac.jp
Journal: Proc Natl Acad Sci U S A. 02 2004;101(6):1543-7
Publication Date: Wednesday, February 11, 2004
PubMed citation

Proteomic analysis of the systemic immune response of Drosophila.
by Levy F, Bulet P, Ehret-Sabatier L.
Affliation: Institut de Biologie Moléculaire et Cellulaire, 15 rue René Descartes, 67084 Strasbourg Cedex, France.
Journal: Mol Cell Proteomics. 11 2003;3(2):156-66
Publication Date: Tuesday, February 10, 2004
PubMed citation

Prediction of protein structure by simulating coarse-grained folding pathways: a preliminary report.
by Colubri A.
Affliation: Searle Chemistry Lab, University of Chicago, 5735 South Ellis Ave #126, Chicago, Illinois 60637, USA. acolubri@uchicago.edu
Journal: J Biomol Struct Dyn. 21(5):625-38
Publication Date: Tuesday, February 10, 2004
PubMed citation

Molecular cloning of a sixth member of the K+-dependent Na+/Ca2+ exchanger gene family, NCKX6.
by Cai X, Lytton J.
Affliation: Cardiovascular Research Group, Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, Alberta T2N 4N1, Canada.
Journal: J Biol Chem. 11 2003;279(7):5867-76
Publication Date: Monday, February 09, 2004
PubMed citation

In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database.
by Friso G, Giacomelli L, Ytterberg AJ, Peltier JB, Rudella A, Sun Q, Wijk KJ.
Affliation: Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
Journal: Plant Cell. 01 2004;16(2):478-99
Publication Date: Monday, February 09, 2004
PubMed citation

Identification and characterization of human LLGL4 gene and mouse Llgl4 gene in silico.
by Katoh M, Katoh M.
Affliation: M&M Medical BioInformatics, Narashino 275-0022, Japan.
Journal: Int J Oncol. 24(3):737-42
Publication Date: Monday, February 09, 2004
PubMed citation



Identification and characterization of Crumbs homolog 2 gene at human chromosome 9q33.3.
by Katoh M, Katoh M.
Affliation: M&M Medical BioInformatics, Narashino 275-0022, Japan.
Journal: Int J Oncol. 24(3):743-9
Publication Date: Monday, February 09, 2004
PubMed citation

Identification and characterization of human DIAPH3 gene in silico.
by Katoh M, Katoh M.
Affliation: M&M Medical BioInformatics, Narashino 275-0022, Japan.
Journal: Int J Mol Med. 13(3):473-8
Publication Date: Monday, February 09, 2004
PubMed citation

Topics in biomathematics and related computational problems at the beginning of the third millennium. Selected papers from BIOCOMP2002. June 3-9, 2002. Vietri, Italy.
by
Affliation:
Journal: Math Biosci. 2004 Mar-Apr;188:1-233
Publication Date: Monday, February 09, 2004
PubMed citation

Biological computation of image motion from flows over boundaries.
by Johnston A, McOwan PW, Benton CP.
Affliation: Department of Psychology, University College London, Gower Street, London WC1E 6BT, UK. a.johnston@ucl.ac.uk
Journal: J Physiol Paris. 2003 Mar-May;97(2-3):325-34
Publication Date: Monday, February 09, 2004
PubMed citation

Structural genomics for Caenorhabditis elegans: high throughput protein expression analysis.
by Finley JB, Qiu SH, Luan CH, Luo M.
Affliation: Center for Biophysical Sciences and Engineering, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Journal: Protein Expr Purif. 34(1):49-55
Publication Date: Monday, February 09, 2004
PubMed citation

Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex.
by Marmiesse M, Brodin P, Buchrieser C, Gutierrez C, Simoes N, Vincent V, Glaser P, Cole ST, Brosch R.
Affliation: Unité de Génétique Moléculaire Bactérienne, Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris Cedex 15, France.
Journal: Microbiology. 150(Pt 2):483-96
Publication Date: Monday, February 09, 2004
PubMed citation

Genome-wide RNAi analysis of growth and viability in Drosophila cells.
by Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, Koch B, Haas SA, Consortium HF, Paro R, Perrimon N.
Affliation: Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Journal: Science. 303(5659):832-5
Publication Date: Friday, February 06, 2004
PubMed citation

Gene structure conservation aids similarity based gene prediction.
by Meyer IM, Durbin R.
Affliation: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK. meyer@stats.ox.ac.uk
Journal: Nucleic Acids Res. 02 2004;32(2):776-83
Publication Date: Friday, February 06, 2004
PubMed citation

Inferring cellular networks using probabilistic graphical models.
by Friedman N.
Affliation: School of Computer Science and Engineering, Hebrew University, 91904 Jerusalem, Israel. nir@cs.huji.ac.il
Journal: Science. 303(5659):799-805
Publication Date: Friday, February 06, 2004
PubMed citation

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