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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - December, 2003

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Proteomic analysis for early detection of ovarian cancer: a realistic approach?
by Stevens EV, Liotta LA, Kohn EC.
Affliation: Laboratory of Pathology, National Cancer Institute, Center for Cancer Research, NIH, Bethesda, MD 20892, USA.
Journal: Int J Gynecol Cancer. 2003 Nov-Dec;13 Suppl 2:133-9
Publication Date: Friday, December 05, 2003
PubMed citation

Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome?
by Zhang L, Gaut BS.
Affliation: Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA. lqzhang@uchicago.edu
Journal: Genome Res. 13(12):2533-40
Publication Date: Friday, December 05, 2003
PubMed citation

Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.
by Zhang Z, Harrison PM, Liu Y, Gerstein M.
Affliation: Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8114, USA.
Journal: Genome Res. 13(12):2541-58
Publication Date: Friday, December 05, 2003
PubMed citation

A genome-wide survey of human pseudogenes.
by Torrents D, Suyama M, Zdobnov E, Bork P.
Affliation: EMBL, Heidelberg 69117, Germany.
Journal: Genome Res. 13(12):2559-67
Publication Date: Friday, December 05, 2003
PubMed citation

From gene networks to gene function.
by Schlitt T, Palin K, Rung J, Dietmann S, Lappe M, Ukkonen E, Brazma A.
Affliation: European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. schlitt@ebi.ac.uk
Journal: Genome Res. 13(12):2568-76
Publication Date: Friday, December 05, 2003
PubMed citation

Genomic analysis in the sting-2 quantitative trait locus for defensive behavior in the honey bee, Apis mellifera.
by Lobo NF, Ton LQ, Hill CA, Emore C, Romero-Severson J, Hunt GJ, Collins FH.
Affliation: Indiana Center for Insect Genomics, University of Notre Dame, Notre Dame, Indiana 46556, USA.
Journal: Genome Res. 13(12):2588-93
Publication Date: Friday, December 05, 2003
PubMed citation

Sequence information for the splicing of human pre-mRNA identified by support vector machine classification.
by Zhang XH, Heller KA, Hefter I, Leslie CS, Chasin LA.
Affliation: Department of Biological Sciences, Columbia University, New York, New York 10027, USA.
Journal: Genome Res. 13(12):2637-50
Publication Date: Friday, December 05, 2003
PubMed citation

Toward a functional annotation of the human genome using artificial transcription factors.
by Lee DK, Park JW, Kim YJ, Kim J, Lee Y, Kim J, Kim JS.
Affliation: ToolGen, Inc., Yuseong-gu, Daejeon, South Korea, 305-390.
Journal: Genome Res. 13(12):2708-16
Publication Date: Friday, December 05, 2003
PubMed citation

Generation, annotation, evolutionary analysis, and database integration of 20,000 unique sea urchin EST clusters.
by Poustka AJ, Groth D, Hennig S, Thamm S, Cameron A, Beck A, Reinhardt R, Herwig R, Panopoulou G, Lehrach H.
Affliation: Evolution and Development Group, Max Planck Institute for Molecular Genetics, Department of Vertebrate Genomics, 14195 Berlin, Germany. poustka@molgen.mpg.de
Journal: Genome Res. 13(12):2736-46
Publication Date: Friday, December 05, 2003
PubMed citation

A BAC-based physical map of the chicken genome.
by Ren C, Lee MK, Yan B, Ding K, Cox B, Romanov MN, Price JA, Dodgson JB, Zhang HB.
Affliation: Department of Soil and Crop Sciences and Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Journal: Genome Res. 13(12):2754-8
Publication Date: Friday, December 05, 2003
PubMed citation

A protein interaction map of Drosophila melanogaster.
by Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP
Affliation: CuraGen Corporation, 555 Long Wharf Drive, New Haven, CT 06511, USA.
Journal: Science. 11 2003;302(5651):1727-36
Publication Date: Friday, December 05, 2003
PubMed citation



Topological and electron-transfer properties of yeast cytochrome c adsorbed on bare gold electrodes.
by Bonanni B, Alliata D, Bizzarri AR, Cannistraro S.
Affliation: Biophysics and Nanoscience Group, INFM, Dipartimento di Scienze Ambientali Universit della Tuscia, Largo dell'Universit? , 01100 Viterbo, Italy.
Journal: Chemphyschem. 4(11):1183-8
Publication Date: Thursday, December 04, 2003
PubMed citation

Nitric oxide-mediated transcriptional changes in Arabidopsis thaliana.
by Polverari A, Molesini B, Pezzotti M, Buonaurio R, Marte M, Delledonne M.
Affliation: Dipartimento Scientifico e Tecnologico, Universit degli Studi di Verona, 37134 Verona, Italy. annalisa.polverari@univr.it
Journal: Mol Plant Microbe Interact. 16(12):1094-105
Publication Date: Wednesday, December 03, 2003
PubMed citation

Entropy learning and relevance criteria for neural network pruning.
by Ng GS, Wahab A, Shi D.
Affliation: School of Computer Engineering, Nanyang Technological University, Blk N4 2A-32, Nanyang Avenue, Singapore 639798, Singapore. asgsng@ntu.edu.sg
Journal: Int J Neural Syst. 13(5):291-305
Publication Date: Wednesday, December 03, 2003
PubMed citation

GermOnline, a new cross-species community annotation database on germ-line development and gametogenesis.
by Primig M, Wiederkehr C, Basavaraj R, Sarrauste de Menthi?ère C, Hermida L, Koch R, Schlecht U, Dickinson HG, Fellous M, Grootegoed JA, Hawley RS, Jégou B, Maro B, Nicolas A, Orr-Weaver T, Schedl T, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Lamb N, Esposito RE.
Affliation:
Journal: Nat Genet. 35(4):291-2
Publication Date: Wednesday, December 03, 2003
PubMed citation

The Spo0A regulon of Bacillus subtilis.
by Molle V, Fujita M, Jensen ST, Eichenberger P, González-Pastor JE, Liu JS, Losick R.
Affliation: Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Journal: Mol Microbiol. 50(5):1683-701
Publication Date: Wednesday, December 03, 2003
PubMed citation

Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique.
by Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F.
Affliation: Lehrstuhl für Genetik, Universität Bielefeld, D-33594 Bielefeld, Germany. olaf.kaiser@genetik.uni-bielefeld.de
Journal: J Biotechnol. 106(2-3):121-33
Publication Date: Wednesday, December 03, 2003
PubMed citation

Bioinformatics support for high-throughput proteomics.
by Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F.
Affliation: Center for Genome Research, Bielefeld University, D-33594 Bielefeld, Germany. andreas.wilke@genetik.uni-bielefeld.de
Journal: J Biotechnol. 106(2-3):147-56
Publication Date: Wednesday, December 03, 2003
PubMed citation

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
by Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F.
Affliation: Center for Genome Research, Bielefeld University, D-33594 Bielefeld, Germany. alexander.goesmann@genetik.uni-bielefeld.de
Journal: J Biotechnol. 106(2-3):157-67
Publication Date: Wednesday, December 03, 2003
PubMed citation

Personal metabolomics as a next generation nutritional assessment.
by German JB, Roberts MA, Watkins SM.
Affliation: Nestle Research Center, Lausanne 26, Switzerland. University of California, Davis, CA 95616, USA. jbgerman@ucdavis.edu
Journal: J Nutr. 133(12):4260-6
Publication Date: Wednesday, December 03, 2003
PubMed citation

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