Gene length and proximity to neighbors affect genome-wide expression levels.
by Chiaromonte F, Miller W, Bouhassira EE.
Affliation: Department of Statistics and Department of Health Evaluation Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Journal: Genome Res. 11 2003;13(12):2602-8
Publication Date: Friday, December 05, 2003
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Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps.
by Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D.
Affliation: Howard Hughes Medical Institute, University of California at Los Angeles, Box 951570, Los Angeles, CA 90095-1570, USA.
Journal: Nucleic Acids Res. 31(24):7099-109
Publication Date: Friday, December 05, 2003
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Gene structure prediction in syntenic DNA segments.
by Moore JE, Lake JA.
Affliation: Molecular Biology Institute, University of California Los Angeles, Los Angeles, CA 90095, USA.
Journal: Nucleic Acids Res. 31(24):7271-9
Publication Date: Friday, December 05, 2003
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A statistical sampling algorithm for RNA secondary structure prediction.
by Ding Y, Lawrence CE.
Affliation: Bioinformatics Center, Wadsworth Center, New York State Department of Health, 150 New Scotland Avenue, Albany, NY 12208, USA. yding@wadsworth.org
Journal: Nucleic Acids Res. 31(24):7280-301
Publication Date: Friday, December 05, 2003
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Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins.
by Jones S, Shanahan HP, Berman HM, Thornton JM.
Affliation: EMBL--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. suej@ebi.ac.uk
Journal: Nucleic Acids Res. 31(24):7189-98
Publication Date: Friday, December 05, 2003
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Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1.
by Blondal T, Hjorleifsdottir SH, Fridjonsson OF, Aevarsson A, Skirnisdottir S, Hermannsdottir AG, Hreggvidsson GO, Smith AV, Kristjansson JK.
Affliation: Prokaria Ltd, Gylfaflot 5, 101 Reykjavik, Iceland.
Journal: Nucleic Acids Res. 31(24):7247-54
Publication Date: Friday, December 05, 2003
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Bioinformatic analysis of the nucleolus.
by Leung AK, Andersen JS, Mann M, Lamond AI.
Affliation: Division of Gene Regulation and Expression, School of Life Sciences, Wellcome Trust Biocentre, University of Dundee, Scotland, UK. a.k.l.leung@dundee.ac.uk
Journal: Biochem J. 376(Pt 3):553-69
Publication Date: Friday, December 05, 2003
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A protein interaction map of Drosophila melanogaster.
by Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP
Affliation: CuraGen Corporation, 555 Long Wharf Drive, New Haven, CT 06511, USA.
Journal: Science. 11 2003;302(5651):1727-36
Publication Date: Friday, December 05, 2003
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Ethical issues in modern biological technologies.
by Bhargava PM.
Affliation: Anveshna, Furqan Cottage, 12-13-100, Lane No. 1, Street No. 3, Tarnaka, Hyderabad 500 017, India. pmb1928@yahoo.co.in
Journal: Reprod Biomed Online. 7(3):276-85
Publication Date: Friday, December 05, 2003
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An extended commentary on "Models and regulatory considerations for transient temperature rise during diagnostic ultrasound pulses" by Herman and Harris (2002).
by Miller MW, Dewey WC.
Affliation: Department of Obstetrics and Gynecology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA. Morton_Miller@urmc.rochester.edu
Journal: Ultrasound Med Biol. 29(11):1653-9; author response 1661-2
Publication Date: Friday, December 05, 2003
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Tracking EcoKI and DNA fifty years on: a golden story full of surprises.
by Loenen WA.
Affliation: Department of Medical Microbiology, University Maastricht, Maastricht, The Netherlands. wil.loenen@medmic.unimaas.nl
Journal: Nucleic Acids Res. 31(24):7059-69
Publication Date: Friday, December 05, 2003
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Topological and electron-transfer properties of yeast cytochrome c adsorbed on bare gold electrodes.
by Bonanni B, Alliata D, Bizzarri AR, Cannistraro S.
Affliation: Biophysics and Nanoscience Group, INFM, Dipartimento di Scienze Ambientali Universit della Tuscia, Largo dell'Universit? , 01100 Viterbo, Italy.
Journal: Chemphyschem. 4(11):1183-8
Publication Date: Thursday, December 04, 2003
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Model selection methodology in supervised learning with evolutionary computation.
by Rowland JJ.
Affliation: Department of Computer Science, University of Wales, Aberystwyth, SY23 3DB Wales, UK. jjr@aber.ac.uk
Journal: Biosystems. 72(1-2):187-96
Publication Date: Wednesday, December 03, 2003
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Protein interaction: same network, different hubs.
by Hoffmann R, Valencia A.
Affliation: National Center of Biotechnology, CNB-CSIC. Cantoblanco, M-28049 Madrid, Spain. hoffmann@cnb.uam.es
Journal: Trends Genet. 19(12):681-3
Publication Date: Wednesday, December 03, 2003
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Endometriosis from thelarche to midteens: pathogenesis and prognosis, prevention and pedagogy.
by Batt RE, Mitwally MF.
Affliation: Department of Gynecology-Obstetrics, University at Buffalo, The State University of New York, Buffalo, New York 14086, USA. rbatt@acsu.buffalo.edu
Journal: J Pediatr Adolesc Gynecol. 16(6):337-47
Publication Date: Wednesday, December 03, 2003
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Phenotypic plasticity can potentiate rapid evolutionary change.
by Behera N, Nanjundiah V.
Affliation: Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560004, India.
Journal: J Theor Biol. 226(2):177-84
Publication Date: Wednesday, December 03, 2003
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FEMME database: topologic and geometric information of macromolecules.
by Jiménez-Lozano N, Chagoyen M, Cuenca-Alba J, Carazo JM.
Affliation: Unidad de Biocomputación, Centro Nacional de Biotecnologi;a (CNB), Campus Universidad Autónoma, Cantoblanco, 28049 Madrid, Spain.
Journal: J Struct Biol. 2003 Oct-Nov;144(1-2):104-13
Publication Date: Wednesday, December 03, 2003
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Nitric oxide-mediated transcriptional changes in Arabidopsis thaliana.
by Polverari A, Molesini B, Pezzotti M, Buonaurio R, Marte M, Delledonne M.
Affliation: Dipartimento Scientifico e Tecnologico, Universit degli Studi di Verona, 37134 Verona, Italy. annalisa.polverari@univr.it
Journal: Mol Plant Microbe Interact. 16(12):1094-105
Publication Date: Wednesday, December 03, 2003
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The sigma54 regulon (sigmulon) of Pseudomonas putida.
by Cases I, Ussery DW, de Lorenzo V.
Affliation: Centro Nacional de Biotecnología, CSIC Campus de Cantoblanco, 28049 Madrid, Spain.
Journal: Environ Microbiol. 5(12):1281-93
Publication Date: Wednesday, December 03, 2003
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The Spo0A regulon of Bacillus subtilis.
by Molle V, Fujita M, Jensen ST, Eichenberger P, González-Pastor JE, Liu JS, Losick R.
Affliation: Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Journal: Mol Microbiol. 50(5):1683-701
Publication Date: Wednesday, December 03, 2003
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