EyeSite: a semi-automated database of protein families in the eye.
by Lee DA, Fefeu S, Edo-Ukeh AA, Orengo CA, Slingsby C.
Affliation: Department of Crystallography, Birkbeck College, University of London, Malet Street, London WC1E 7HX, UK. dlee@biochem.ucl.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D148-52
Publication Date: Thursday, December 18, 2003
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The KNOTTIN website and database: a new information system dedicated to the knottin scaffold.
by Gelly JC, Gracy J, Kaas Q, Le-Nguyen D, Heitz A, Chiche L.
Affliation: Centre de Biochimie Structurale, UMR 5048 CNRS INSERM Université Montpellier I, Faculté de Pharmacie, 15 avenue Charles Flahault, F-34093 Montpellier, France.
Journal: Nucleic Acids Res. 32 Database issue:D156-9
Publication Date: Thursday, December 18, 2003
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MEROPS: the peptidase database.
by Rawlings ND, Tolle DP, Barrett AJ.
Affliation: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK. ndr@sanger.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D160-4
Publication Date: Thursday, December 18, 2003
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Update of NUREBASE: nuclear hormone receptor functional genomics.
by Ruau D, Duarte J, Ourjdal T, Perrière G, Laudet V, Robinson-Rechavi M.
Affliation: Laboratoire de Biologie Moléculaire de la Cellule, CNRS UMR 5161, Ecole Normale Supérieure de Lyon, 46 allée d'Italie, 69364 Lyon Cedex 07, France.
Journal: Nucleic Acids Res. 32 Database issue:D165-7
Publication Date: Thursday, December 18, 2003
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The KEGG resource for deciphering the genome.
by Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M.
Affliation: Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan. kanehisa@kuicr.kyoto-u.ac.jp
Journal: Nucleic Acids Res. 32 Database issue:D277-80
Publication Date: Thursday, December 18, 2003
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The ORFanage: an ORFan database.
by Siew N, Azaria Y, Fischer D.
Affliation: Department of Chemistry, Ben Gurion University, Beer-Sheva 84105, Israel. nomsiew@cs.bgu.ac.il
Journal: Nucleic Acids Res. 32 Database issue:D281-3
Publication Date: Thursday, December 18, 2003
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JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
by Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B.
Affliation: Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius väg 35, S-17177 Stockholm, Sweden.
Journal: Nucleic Acids Res. 32 Database issue:D91-4
Publication Date: Thursday, December 18, 2003
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Aptamer database.
by Lee JF, Hesselberth JR, Meyers LA, Ellington AD.
Affliation: Department of Chemistry and Biochemistry, Institute for Cell and Molecular Biology, University of Texas at Austin, 1 University Station A4800, Austin, TX 78712, USA.
Journal: Nucleic Acids Res. 32 Database issue:D95-100
Publication Date: Thursday, December 18, 2003
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TransportDB: a relational database of cellular membrane transport systems.
by Ren Q, Kang KH, Paulsen IT.
Affliation: The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
Journal: Nucleic Acids Res. 32 Database issue:D284-8
Publication Date: Thursday, December 18, 2003
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VirGen: a comprehensive viral genome resource.
by Kulkarni-Kale U, Bhosle S, Manjari GS, Kolaskar AS.
Affliation: Bioinformatics Centre, University of Pune, Pune 411 007, India. urmila@bioinfo.ernet.in
Journal: Nucleic Acids Res. 32 Database issue:D289-92
Publication Date: Thursday, December 18, 2003
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The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli.
by Sundararaj S, Guo A, Habibi-Nazhad B, Rouani M, Stothard P, Ellison M, Wishart DS.
Affliation: Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, Alberta T6G 2N8, Canada.
Journal: Nucleic Acids Res. 32 Database issue:D293-5
Publication Date: Thursday, December 18, 2003
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coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.
by Chaudhuri RR, Khan AM, Pallen MJ.
Affliation: Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Journal: Nucleic Acids Res. 32 Database issue:D296-9
Publication Date: Thursday, December 18, 2003
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The European ribosomal RNA database.
by Wuyts J, Perrière G, Van De Peer Y.
Affliation: Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology (VIB), Ghent University, Technologiepark 927, B-9052 Ghent, Belgium.
Journal: Nucleic Acids Res. 32 Database issue:D101-3
Publication Date: Thursday, December 18, 2003
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The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
by Gueneau de Novoa P, Williams KP.
Affliation: Centro de Biofisica y Bioquimica, Instituto Venezolano de Investigaciones Cientificas, Altos de Pipe, MI, Venezuela.
Journal: Nucleic Acids Res. 32 Database issue:D104-8
Publication Date: Thursday, December 18, 2003
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The microRNA Registry.
by Griffiths-Jones S.
Affliation: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 9SA, UK. sgj@sanger.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D109-11
Publication Date: Thursday, December 18, 2003
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PIRSF: family classification system at the Protein Information Resource.
by Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, Ledley RS, Suzek BE, Arminski L, Chen Y, Zhang J, Cardenas JL, Chung S, Castro-Alvear J, Dinkov G, Barker WC.
Affliation: Department of Biochemistry and Molecular Biology, Georgetown University Medical Center, 3900 Reservoir Road, NW, Box 571414, Washington, DC 20057-1414, USA. pirmail@georgetown.edu
Journal: Nucleic Acids Res. 32 Database issue:D112-4
Publication Date: Thursday, December 18, 2003
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MolliGen, a database dedicated to the comparative genomics of Mollicutes.
by Barré A, de Daruvar A, Blanchard A.
Affliation: INRA-Université de Bordeaux 2, IBVM, Bordeaux, France.
Journal: Nucleic Acids Res. 32 Database issue:D307-10
Publication Date: Thursday, December 18, 2003
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Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
by Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM.
Affliation: Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305-5120, USA.
Journal: Nucleic Acids Res. 32 Database issue:D311-4
Publication Date: Thursday, December 18, 2003
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UniProt: the Universal Protein knowledgebase.
by Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.
Affliation: The EMBL Outstation--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. apweiler@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D115-9
Publication Date: Thursday, December 18, 2003
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DBSubLoc: database of protein subcellular localization.
by Guo T, Hua S, Ji X, Sun Z.
Affliation: Institute of Bioinformatics, Department of Biological Sciences and Biotechnology, Tsinghua University, Beijing 100084, China.
Journal: Nucleic Acids Res. 32 Database issue:D122-4
Publication Date: Thursday, December 18, 2003
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