SURFACE: a database of protein surface regions for functional annotation.
by Ferrè F, Ausiello G, Zanzoni A, Helmer-Citterich M.
Affliation: Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy.
Journal: Nucleic Acids Res. 32 Database issue:D240-4
Publication Date: Thursday, December 18, 2003
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3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
by Fleming K, Müller A, MacCallum RM, Sternberg MJ.
Affliation: Department of Biological Sciences and Centre for Bioinformatics, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.
Journal: Nucleic Acids Res. 32 Database issue:D245-50
Publication Date: Thursday, December 18, 2003
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TOPS: an enhanced database of protein structural topology.
by Michalopoulos I, Torrance GM, Gilbert DR, Westhead DR.
Affliation: School of Biochemistry and Molecular Biology, University of Leeds, Leeds LS2 9JT, UK.
Journal: Nucleic Acids Res. 32 Database issue:D251-4
Publication Date: Thursday, December 18, 2003
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Genew: the Human Gene Nomenclature Database, 2004 updates.
by Wain HM, Lush MJ, Ducluzeau F, Khodiyar VK, Povey S.
Affliation: HUGO Gene Nomenclature Committee (HGNC), Department of Biology, University College London, Wolfson House, 4 Stephenson Way, London NW1 2HE, UK. nome@galton.ucl.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D255-7
Publication Date: Thursday, December 18, 2003
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The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
by Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.
Affliation: European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. goa@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D262-6
Publication Date: Thursday, December 18, 2003
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The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.
by Schmid CD, Praz V, Delorenzi M, Périer R, Bucher P.
Affliation: Swiss Institute of Bioinformatics, Ch. des Boveresses 155, 1066 Epalinges s/Lausanne, Switzerland.
Journal: Nucleic Acids Res. 32 Database issue:D82-5
Publication Date: Thursday, December 18, 2003
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The Unified Medical Language System (UMLS): integrating biomedical terminology.
by Bodenreider O.
Affliation: Lister Hill Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA. olivier@nlm.nih.gov
Journal: Nucleic Acids Res. 32 Database issue:D267-70
Publication Date: Thursday, December 18, 2003
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DEG: a database of essential genes.
by Zhang R, Ou HY, Zhang CT.
Affliation: Department of Epidemiology and Biostatistics, Tianjin Cancer Institute and Hospital, Tianjin 300060, China.
Journal: Nucleic Acids Res. 32 Database issue:D271-2
Publication Date: Thursday, December 18, 2003
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Use of proteomic analysis to monitor responses to biological therapies.
by Espina V, Dettloff KA, Cowherd S, Petricoin EF, Liotta LA.
Affliation: National Cancer Institute, NIH, Building 10, Room B1B53, 9000 Rockville Pike, Bethesda, MD 20892, USA. espinav@mail.nih.gov
Journal: Expert Opin Biol Ther. 4(1):83-93
Publication Date: Thursday, December 18, 2003
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FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.
by Suhre K, Claverie JM.
Affliation: Information Génomique and Structurale, CNRS-UPR 2589, 31 chemin Joseph Aiguier, 13402 Marseille Cedex 20, France. karsten.suhre@igs.cnrs-mrs.fr
Journal: Nucleic Acids Res. 32 Database issue:D273-6
Publication Date: Thursday, December 18, 2003
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HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
by Pohar TT, Sun H, Davuluri RV.
Affliation: Division of Human Cancer Genetics, Comprehensive Cancer Center, Department of Molecular Virology, Immunology and Medical Genetics, Ohio State University, Columbus, OH 43210, USA.
Journal: Nucleic Acids Res. 32 Database issue:D86-90
Publication Date: Thursday, December 18, 2003
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Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species.
by Watanabe J, Suzuki Y, Sasaki M, Sugano S.
Affliation: Department of Parasitology, Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1, Shirokanedai, Minatoku, Tokyo 108-8639, Japan. jwatanab@ims.u-tokyo.ac.jp
Journal: Nucleic Acids Res. 32 Database issue:D334-8
Publication Date: Thursday, December 18, 2003
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GeneDB: a resource for prokaryotic and eukaryotic organisms.
by Hertz-Fowler C, Peacock CS, Wood V, Aslett M, Kerhornou A, Mooney P, Tivey A, Berriman M, Hall N, Rutherford K, Parkhill J, Ivens AC, Rajandream MA, Barrell B.
Affliation: The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK. chf@sanger.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D339-43
Publication Date: Thursday, December 18, 2003
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TcruziDB: an integrated Trypanosoma cruzi genome resource.
by Luchtan M, Warade C, Weatherly DB, Degrave WM, Tarleton RL, Kissinger JC.
Affliation: Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA 30602-2606, USA.
Journal: Nucleic Acids Res. 32 Database issue:D344-6
Publication Date: Thursday, December 18, 2003
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The Pfam protein families database.
by Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR.
Affliation: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK. agb@sanger.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D138-41
Publication Date: Thursday, December 18, 2003
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SMART 4.0: towards genomic data integration.
by Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P.
Affliation: EMBL, Meyerhofstrasse 1, 69012 Heidelberg, Germany.
Journal: Nucleic Acids Res. 32 Database issue:D142-4
Publication Date: Thursday, December 18, 2003
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FLAGdb++: a database for the functional analysis of the Arabidopsis genome.
by Samson F, Brunaud V, Duchêne S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S.
Affliation: Unité de Recherche en Génomique Végétale (URGV), UMR INRA 1165, CNRS 8114, Université d'Evry Val d'Essonne, 2 rue Gaston Crémieux, CP 5708, F-91057 Evry Cedex, France.
Journal: Nucleic Acids Res. 32 Database issue:D347-50
Publication Date: Thursday, December 18, 2003
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ESTHER, the database of the alpha/beta-hydrolase fold superfamily of proteins.
by Hotelier T, Renault L, Cousin X, Negre V, Marchot P, Chatonnet A.
Affliation: UIC INRA-AgroM, Place Viala, 34060 Montpellier, France.
Journal: Nucleic Acids Res. 32 Database issue:D145-7
Publication Date: Thursday, December 18, 2003
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PHYTOPROT: a database of clusters of plant proteins.
by Mohseni-Zadeh S, Louis A, Brézellec P, Risler JL.
Affliation: Laboratoire G?énome et Informatique, UMR 8116 and Infobiogen, Tour Evry 2, 523 Place des Terrasses, 91034 Evry Cedex, France.
Journal: Nucleic Acids Res. 32 Database issue:D351-3
Publication Date: Thursday, December 18, 2003
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PlantGDB, plant genome database and analysis tools.
by Dong Q, Schlueter SD, Brendel V.
Affliation: Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011-3260, USA.
Journal: Nucleic Acids Res. 32 Database issue:D354-9
Publication Date: Thursday, December 18, 2003
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