The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.
by Schmid CD, Praz V, Delorenzi M, Périer R, Bucher P.
Affliation: Swiss Institute of Bioinformatics, Ch. des Boveresses 155, 1066 Epalinges s/Lausanne, Switzerland.
Journal: Nucleic Acids Res. 32 Database issue:D82-5
Publication Date: Thursday, December 18, 2003
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HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
by Pohar TT, Sun H, Davuluri RV.
Affliation: Division of Human Cancer Genetics, Comprehensive Cancer Center, Department of Molecular Virology, Immunology and Medical Genetics, Ohio State University, Columbus, OH 43210, USA.
Journal: Nucleic Acids Res. 32 Database issue:D86-90
Publication Date: Thursday, December 18, 2003
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The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants.
by Ouyang S, Buell CR.
Affliation: The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
Journal: Nucleic Acids Res. 32 Database issue:D360-3
Publication Date: Thursday, December 18, 2003
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TropGENE-DB, a multi-tropical crop information system.
by Ruiz M, Rouard M, Raboin LM, Lartaud M, Lagoda P, Courtois B.
Affliation: CIRAD, Biotrop, TA 40/03, Avenue Agropolis, 34398 Montpellier Cedex 5, France. manuel.ruiz@cirad.fr
Journal: Nucleic Acids Res. 32 Database issue:D364-7
Publication Date: Thursday, December 18, 2003
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AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome.
by Steffens NO, Galuschka C, Schindler M, Bülow L, Hehl R.
Affliation: Institut für Genetik, Technische Universität Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany.
Journal: Nucleic Acids Res. 32 Database issue:D368-72
Publication Date: Thursday, December 18, 2003
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JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
by Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B.
Affliation: Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius väg 35, S-17177 Stockholm, Sweden.
Journal: Nucleic Acids Res. 32 Database issue:D91-4
Publication Date: Thursday, December 18, 2003
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Aptamer database.
by Lee JF, Hesselberth JR, Meyers LA, Ellington AD.
Affliation: Department of Chemistry and Biochemistry, Institute for Cell and Molecular Biology, University of Texas at Austin, 1 University Station A4800, Austin, TX 78712, USA.
Journal: Nucleic Acids Res. 32 Database issue:D95-100
Publication Date: Thursday, December 18, 2003
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MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics.
by Schoof H, Ernst R, Nazarov V, Pfeifer L, Mewes HW, Mayer KF.
Affliation: Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany. h.schoof@wzw.tum.de
Journal: Nucleic Acids Res. 32 Database issue:D373-6
Publication Date: Thursday, December 18, 2003
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BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.
by Zhao W, Wang J, He X, Huang X, Jiao Y, Dai M, Wei S, Fu J, Chen Y, Ren X, Zhang Y, Ni P, Zhang J, Li S, Wang J, Wong GK, Zhao H, Yu J, Yang H, Wang J.
Affliation: Beijing Genomics Institute (BGI), Chinese Academy of Sciences (CAS), Beijing Airport Industrial Zone-B6, Beijing 101300, China.
Journal: Nucleic Acids Res. 32 Database issue:D377-82
Publication Date: Thursday, December 18, 2003
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The European ribosomal RNA database.
by Wuyts J, Perrière G, Van De Peer Y.
Affliation: Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology (VIB), Ghent University, Technologiepark 927, B-9052 Ghent, Belgium.
Journal: Nucleic Acids Res. 32 Database issue:D101-3
Publication Date: Thursday, December 18, 2003
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The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
by Gueneau de Novoa P, Williams KP.
Affliation: Centro de Biofisica y Bioquimica, Instituto Venezolano de Investigaciones Cientificas, Altos de Pipe, MI, Venezuela.
Journal: Nucleic Acids Res. 32 Database issue:D104-8
Publication Date: Thursday, December 18, 2003
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The Rice PIPELINE: a unification tool for plant functional genomics.
by Yazaki J, Kojima K, Suzuki K, Kishimoto N, Kikuchi S.
Affliation: Department of Molecular Biology, National Institute of Agrobiological Sciences, 2-1-2 Kannon-dai, Tsukuba, Ibaraki 305-8602, Japan.
Journal: Nucleic Acids Res. 32 Database issue:D383-7
Publication Date: Thursday, December 18, 2003
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Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003.
by Komatsu S, Kojima K, Suzuki K, Ozaki K, Higo K.
Affliation: National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan. skomatsu@affrc.go.jp
Journal: Nucleic Acids Res. 32 Database issue:D388-92
Publication Date: Thursday, December 18, 2003
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The microRNA Registry.
by Griffiths-Jones S.
Affliation: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 9SA, UK. sgj@sanger.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D109-11
Publication Date: Thursday, December 18, 2003
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PIRSF: family classification system at the Protein Information Resource.
by Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, Ledley RS, Suzek BE, Arminski L, Chen Y, Zhang J, Cardenas JL, Chung S, Castro-Alvear J, Dinkov G, Barker WC.
Affliation: Department of Biochemistry and Molecular Biology, Georgetown University Medical Center, 3900 Reservoir Road, NW, Box 571414, Washington, DC 20057-1414, USA. pirmail@georgetown.edu
Journal: Nucleic Acids Res. 32 Database issue:D112-4
Publication Date: Thursday, December 18, 2003
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MaizeGDB, the community database for maize genetics and genomics.
by Lawrence CJ, Dong Q, Polacco ML, Seigfried TE, Brendel V.
Affliation: Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011-3260, USA.
Journal: Nucleic Acids Res. 32 Database issue:D393-7
Publication Date: Thursday, December 18, 2003
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SGMD: the Soybean Genomics and Microarray Database.
by Alkharouf NW, Matthews BF.
Affliation: Soybean Genomics and Improvement Laboratory, USDA-ARS, Building 006, Room 118, 10300 Baltimore Avenue, Beltsville, MD 20705-2350, USA.
Journal: Nucleic Acids Res. 32 Database issue:D398-400
Publication Date: Thursday, December 18, 2003
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CADRE: the Central Aspergillus Data REpository.
by Mabey JE, Anderson MJ, Giles PF, Miller CJ, Attwood TK, Paton NW, Bornberg-Bauer E, Robson GD, Oliver SG, Denning DW.
Affliation: School of Medicine, University of Manchester, Manchester M13 9PT, UK. jane.mabey@man.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D401-5
Publication Date: Thursday, December 18, 2003
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WormBase: a multi-species resource for nematode biology and genomics.
by Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.
Affliation: Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. harris@cshl.org
Journal: Nucleic Acids Res. 32 Database issue:D411-7
Publication Date: Thursday, December 18, 2003
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UniProt: the Universal Protein knowledgebase.
by Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.
Affliation: The EMBL Outstation--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. apweiler@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D115-9
Publication Date: Thursday, December 18, 2003
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