DSDBASE: a consortium of native and modelled disulphide bonds in proteins.
by Vinayagam A, Pugalenthi G, Rajesh R, Sowdhamini R.
Affliation: National Centre for Biological Sciences, UAS-GKVK Campus, Bangalore 560065, India.
Journal: Nucleic Acids Res. 32 Database issue:D200-2
Publication Date: Thursday, December 18, 2003
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HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.
by Stebbings LA, Mizuguchi K.
Affliation: Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, UK. homstrad@cryst.bioc.cam.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D203-7
Publication Date: Thursday, December 18, 2003
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IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data.
by Kaas Q, Ruiz M, Lefranc MP.
Affliation: IMGT, the international ImMunoGeneTics information system, Laboratoire d'ImmunoGénétique Moléculaire, LIGM, Institut de Génétique Humaine IGH, UPR CNRS 1142, 141 rue de la Cardonille, F-34396 Montpellier Cedex 5, France.
Journal: Nucleic Acids Res. 32 Database issue:D208-10
Publication Date: Thursday, December 18, 2003
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Structural bioinformatics study of EPSP synthase from Mycobacterium tuberculosis.
by Pereira JH, Canduri F, de Oliveira JS, da Silveira NJ, Basso LA, Palma MS, de Azevedo WF, Santos DS.
Affliation: Departamento de Física, UNESP, São José do Rio Preto, SP 15054-000, Brazil.
Journal: Biochem Biophys Res Commun. 312(3):608-14
Publication Date: Thursday, December 18, 2003
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The EMBL Nucleotide Sequence Database.
by Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, van den Broek A, Cochrane G, Duggan K, Eberhardt R, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, McHale M, Nardone F, Silventoinen V, Stoehr P, Stoesser G, Tuli MA, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.
Affliation: EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. kulikova@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D27-30
Publication Date: Thursday, December 18, 2003
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E-MSD: an integrated data resource for bioinformatics.
by Golovin A, Oldfield TJ, Tate JG, Velankar S, Barton GJ, Boutselakis H, Dimitropoulos D, Fillon J, Hussain A, Ionides JM, John M, Keller PA, Krissinel E, McNeil P, Naim A, Newman R, Pajon A, Pineda J, Rachedi A, Copeland J, Sitnov A, Sobhany S, Suarez-Uruena A, Swaminathan GJ, Tagari M, Tromm S, Vranken W, Henrick K.
Affliation: EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Journal: Nucleic Acids Res. 32 Database issue:D211-6
Publication Date: Thursday, December 18, 2003
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Database resources of the National Center for Biotechnology Information: update.
by Wheeler DL, Church DM, Edgar R, Federhen S, Helmberg W, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Suzek TO, Tatusova TA, Wagner L.
Affliation: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA. wheeler@ncbi.nlm.nih.gov
Journal: Nucleic Acids Res. 32 Database issue:D35-40
Publication Date: Thursday, December 18, 2003
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MODBASE, a database of annotated comparative protein structure models, and associated resources.
by Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A.
Affliation: Department of Biopharmaceutical Sciences, and California Institute for Quantitative Biomedical Research, Mission Bay Genentech Hall, 600 16th Street, Suite N472D, University of California San Francisco, San Francisco, CA 94143-2240, USA.
Journal: Nucleic Acids Res. 32 Database issue:D217-22
Publication Date: Thursday, December 18, 2003
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The distribution and query systems of the RCSB Protein Data Bank.
by Bourne PE, Addess KJ, Bluhm WF, Chen L, Deshpande N, Feng Z, Fleri W, Green R, Merino-Ott JC, Townsend-Merino W, Weissig H, Westbrook J, Berman HM.
Affliation: San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0505, USA. bourne@sdsc.edu
Journal: Nucleic Acids Res. 32 Database issue:D223-5
Publication Date: Thursday, December 18, 2003
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SCOP database in 2004: refinements integrate structure and sequence family data.
by Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.
Affliation: MRC Centre for Protein Engineering, Hills Road, Cambridge CB2 2QH, UK.
Journal: Nucleic Acids Res. 32 Database issue:D226-9
Publication Date: Thursday, December 18, 2003
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MIPS: analysis and annotation of proteins from whole genomes.
by Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, Münsterkötter M, Pagel P, Strack N, Stümpflen V, Warfsmann J, Ruepp A.
Affliation: Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany. w.mewes@gsf.de
Journal: Nucleic Acids Res. 32 Database issue:D41-4
Publication Date: Thursday, December 18, 2003
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The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
by Kopp J, Schwede T.
Affliation: Biozentrum der Universität Basel and Swiss Institute of Bioinformatics, Klingelbergstrasse 50-70, CH 4056 Basel, Switzerland.
Journal: Nucleic Acids Res. 32 Database issue:D230-4
Publication Date: Thursday, December 18, 2003
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ACLAME: a CLAssification of Mobile genetic Elements.
by Leplae R, Hebrant A, Wodak SJ, Toussaint A.
Affliation: Service de Conformation de Macromolécules Biologiques et de Bioinformatique, Université Libre de Bruxelles, Belgium. raphael@scmbb.ulb.ac.be
Journal: Nucleic Acids Res. 32 Database issue:D45-9
Publication Date: Thursday, December 18, 2003
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The SUPERFAMILY database in 2004: additions and improvements.
by Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J.
Affliation: MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. mm238@mrc-lmb.cam.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D235-9
Publication Date: Thursday, December 18, 2003
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HERVd: the Human Endogenous RetroViruses Database: update.
by Paces J, Pavlícek A, Zika R, Kapitonov VV, Jurka J, Paces V.
Affliation: Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Flemingovo 2, CZ-16637 Prague, Czech Republic.
Journal: Nucleic Acids Res. 32 Database issue:D50
Publication Date: Thursday, December 18, 2003
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IMGT/GeneInfo: enhancing V(D)J recombination database accessibility.
by Baum TP, Pasqual N, Thuderoz F, Hierle V, Chaume D, Lefranc MP, Jouvin-Marche E, Marche PN, Demongeot J.
Affliation: Laboratoire TIMC-IMAG-CNRS UMR 5525, Techniques de l'Imagerie, de la Modélisation et de la Cognition, Université Joseph Fourier, Grenoble 1, Faculté de Médecine, Domaine de la Merci, 38706 La Tronche, France. tpbaum@imag.fr
Journal: Nucleic Acids Res. 32 Database issue:D51-4
Publication Date: Thursday, December 18, 2003
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Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities.
by Mantri Y, Williams KP.
Affliation: Department of Biology, Indiana University, 1001 E. Third Street, Bloomington, IN 47405, USA.
Journal: Nucleic Acids Res. 32 Database issue:D55-8
Publication Date: Thursday, December 18, 2003
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Xpro: database of eukaryotic protein-encoding genes.
by Gopalan V, Tan TW, Lee BT, Ranganathan S.
Affliation: Department of Biochemistry, National University of Singapore, Singapore 119260.
Journal: Nucleic Acids Res. 32 Database issue:D59-63
Publication Date: Thursday, December 18, 2003
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ASD: the Alternative Splicing Database.
by Thanaraj TA, Stamm S, Clark F, Riethoven JJ, Le Texier V, Muilu J.
Affliation: European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. thanaraj@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D64-9
Publication Date: Thursday, December 18, 2003
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EASED: Extended Alternatively Spliced EST Database.
by Pospisil H, Herrmann A, Bortfeldt RH, Reich JG.
Affliation: Max-Delbrück-Center for Molecular Medicine, Department of Bioinformatics, Robert-Rössle-Strasse 10, 13125 Berlin, Germany. pospisil@mdc-berlin.de
Journal: Nucleic Acids Res. 32 Database issue:D70-4
Publication Date: Thursday, December 18, 2003
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