The distribution and query systems of the RCSB Protein Data Bank.
by Bourne PE, Addess KJ, Bluhm WF, Chen L, Deshpande N, Feng Z, Fleri W, Green R, Merino-Ott JC, Townsend-Merino W, Weissig H, Westbrook J, Berman HM.
Affliation: San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0505, USA. bourne@sdsc.edu
Journal: Nucleic Acids Res. 32 Database issue:D223-5
Publication Date: Thursday, December 18, 2003
PubMed citation
|
SCOP database in 2004: refinements integrate structure and sequence family data.
by Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.
Affliation: MRC Centre for Protein Engineering, Hills Road, Cambridge CB2 2QH, UK.
Journal: Nucleic Acids Res. 32 Database issue:D226-9
Publication Date: Thursday, December 18, 2003
PubMed citation
|
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
by Pohar TT, Sun H, Davuluri RV.
Affliation: Division of Human Cancer Genetics, Comprehensive Cancer Center, Department of Molecular Virology, Immunology and Medical Genetics, Ohio State University, Columbus, OH 43210, USA.
Journal: Nucleic Acids Res. 32 Database issue:D86-90
Publication Date: Thursday, December 18, 2003
PubMed citation
|
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
by Kopp J, Schwede T.
Affliation: Biozentrum der Universität Basel and Swiss Institute of Bioinformatics, Klingelbergstrasse 50-70, CH 4056 Basel, Switzerland.
Journal: Nucleic Acids Res. 32 Database issue:D230-4
Publication Date: Thursday, December 18, 2003
PubMed citation
|
The SUPERFAMILY database in 2004: additions and improvements.
by Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J.
Affliation: MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. mm238@mrc-lmb.cam.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D235-9
Publication Date: Thursday, December 18, 2003
PubMed citation
|
SURFACE: a database of protein surface regions for functional annotation.
by Ferrè F, Ausiello G, Zanzoni A, Helmer-Citterich M.
Affliation: Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy.
Journal: Nucleic Acids Res. 32 Database issue:D240-4
Publication Date: Thursday, December 18, 2003
PubMed citation
|
3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
by Fleming K, Müller A, MacCallum RM, Sternberg MJ.
Affliation: Department of Biological Sciences and Centre for Bioinformatics, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.
Journal: Nucleic Acids Res. 32 Database issue:D245-50
Publication Date: Thursday, December 18, 2003
PubMed citation
|
TOPS: an enhanced database of protein structural topology.
by Michalopoulos I, Torrance GM, Gilbert DR, Westhead DR.
Affliation: School of Biochemistry and Molecular Biology, University of Leeds, Leeds LS2 9JT, UK.
Journal: Nucleic Acids Res. 32 Database issue:D251-4
Publication Date: Thursday, December 18, 2003
PubMed citation
|
Genew: the Human Gene Nomenclature Database, 2004 updates.
by Wain HM, Lush MJ, Ducluzeau F, Khodiyar VK, Povey S.
Affliation: HUGO Gene Nomenclature Committee (HGNC), Department of Biology, University College London, Wolfson House, 4 Stephenson Way, London NW1 2HE, UK. nome@galton.ucl.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D255-7
Publication Date: Thursday, December 18, 2003
PubMed citation
|
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
by Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.
Affliation: European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. goa@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D262-6
Publication Date: Thursday, December 18, 2003
PubMed citation
|
The Unified Medical Language System (UMLS): integrating biomedical terminology.
by Bodenreider O.
Affliation: Lister Hill Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA. olivier@nlm.nih.gov
Journal: Nucleic Acids Res. 32 Database issue:D267-70
Publication Date: Thursday, December 18, 2003
PubMed citation
|
DEG: a database of essential genes.
by Zhang R, Ou HY, Zhang CT.
Affliation: Department of Epidemiology and Biostatistics, Tianjin Cancer Institute and Hospital, Tianjin 300060, China.
Journal: Nucleic Acids Res. 32 Database issue:D271-2
Publication Date: Thursday, December 18, 2003
PubMed citation
|
JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
by Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B.
Affliation: Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius väg 35, S-17177 Stockholm, Sweden.
Journal: Nucleic Acids Res. 32 Database issue:D91-4
Publication Date: Thursday, December 18, 2003
PubMed citation
|
Aptamer database.
by Lee JF, Hesselberth JR, Meyers LA, Ellington AD.
Affliation: Department of Chemistry and Biochemistry, Institute for Cell and Molecular Biology, University of Texas at Austin, 1 University Station A4800, Austin, TX 78712, USA.
Journal: Nucleic Acids Res. 32 Database issue:D95-100
Publication Date: Thursday, December 18, 2003
PubMed citation
|
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.
by Suhre K, Claverie JM.
Affliation: Information Génomique and Structurale, CNRS-UPR 2589, 31 chemin Joseph Aiguier, 13402 Marseille Cedex 20, France. karsten.suhre@igs.cnrs-mrs.fr
Journal: Nucleic Acids Res. 32 Database issue:D273-6
Publication Date: Thursday, December 18, 2003
PubMed citation
|
The European ribosomal RNA database.
by Wuyts J, Perrière G, Van De Peer Y.
Affliation: Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology (VIB), Ghent University, Technologiepark 927, B-9052 Ghent, Belgium.
Journal: Nucleic Acids Res. 32 Database issue:D101-3
Publication Date: Thursday, December 18, 2003
PubMed citation
|
The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
by Gueneau de Novoa P, Williams KP.
Affliation: Centro de Biofisica y Bioquimica, Instituto Venezolano de Investigaciones Cientificas, Altos de Pipe, MI, Venezuela.
Journal: Nucleic Acids Res. 32 Database issue:D104-8
Publication Date: Thursday, December 18, 2003
PubMed citation
|
The microRNA Registry.
by Griffiths-Jones S.
Affliation: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 9SA, UK. sgj@sanger.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D109-11
Publication Date: Thursday, December 18, 2003
PubMed citation
|
PIRSF: family classification system at the Protein Information Resource.
by Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, Ledley RS, Suzek BE, Arminski L, Chen Y, Zhang J, Cardenas JL, Chung S, Castro-Alvear J, Dinkov G, Barker WC.
Affliation: Department of Biochemistry and Molecular Biology, Georgetown University Medical Center, 3900 Reservoir Road, NW, Box 571414, Washington, DC 20057-1414, USA. pirmail@georgetown.edu
Journal: Nucleic Acids Res. 32 Database issue:D112-4
Publication Date: Thursday, December 18, 2003
PubMed citation
|
UniProt: the Universal Protein knowledgebase.
by Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.
Affliation: The EMBL Outstation--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. apweiler@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D115-9
Publication Date: Thursday, December 18, 2003
PubMed citation
|
|
|
|