MaizeGDB, the community database for maize genetics and genomics.
by Lawrence CJ, Dong Q, Polacco ML, Seigfried TE, Brendel V.
Affliation: Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011-3260, USA.
Journal: Nucleic Acids Res. 32 Database issue:D393-7
Publication Date: Thursday, December 18, 2003
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SGMD: the Soybean Genomics and Microarray Database.
by Alkharouf NW, Matthews BF.
Affliation: Soybean Genomics and Improvement Laboratory, USDA-ARS, Building 006, Room 118, 10300 Baltimore Avenue, Beltsville, MD 20705-2350, USA.
Journal: Nucleic Acids Res. 32 Database issue:D398-400
Publication Date: Thursday, December 18, 2003
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CADRE: the Central Aspergillus Data REpository.
by Mabey JE, Anderson MJ, Giles PF, Miller CJ, Attwood TK, Paton NW, Bornberg-Bauer E, Robson GD, Oliver SG, Denning DW.
Affliation: School of Medicine, University of Manchester, Manchester M13 9PT, UK. jane.mabey@man.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D401-5
Publication Date: Thursday, December 18, 2003
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WormBase: a multi-species resource for nematode biology and genomics.
by Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.
Affliation: Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. harris@cshl.org
Journal: Nucleic Acids Res. 32 Database issue:D411-7
Publication Date: Thursday, December 18, 2003
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AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus.
by Srinivasan J, Otto GW, Kahlow U, Geisler R, Sommer RJ.
Affliation: Abteilung für Evolutionsbiologie, Max-Planck Institut für Entwicklungsbiologie, Spemannstrasse 35-37, 72076 Tübingen, Germany.
Journal: Nucleic Acids Res. 32 Database issue:D421-2
Publication Date: Thursday, December 18, 2003
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Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes.
by Wylie T, Martin JC, Dante M, Mitreva MD, Clifton SW, Chinwalla A, Waterston RH, Wilson RK, McCarter JP.
Affliation: The Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA. twylie@watson.wustl.edu
Journal: Nucleic Acids Res. 32 Database issue:D423-6
Publication Date: Thursday, December 18, 2003
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NEMBASE: a resource for parasitic nematode ESTs.
by Parkinson J, Whitton C, Schmid R, Thomson M, Blaxter M.
Affliation: Institute of Cell, Animal and Population Biology, Ashworth Laboratories, King's Buildings, West Mains Road, University of Edinburgh, Edinburgh EH9 3JT, UK. jparkin@sickkids.ca
Journal: Nucleic Acids Res. 32 Database issue:D427-30
Publication Date: Thursday, December 18, 2003
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The aMAZE LightBench: a web interface to a relational database of cellular processes.
by Lemer C, Antezana E, Couche F, Fays F, Santolaria X, Janky R, Deville Y, Richelle J, Wodak SJ.
Affliation: The aMAZE Project, SCMBB, Université libre de Bruxelles, boulevard du Triomphe CP 263, B-1050 Bruxelles, Belgium.
Journal: Nucleic Acids Res. 32 Database issue:D443-8
Publication Date: Thursday, December 18, 2003
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The Database of Interacting Proteins: 2004 update.
by Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D.
Affliation: Howard Hughes Medical Institute, UCLA-DOE Institute for Genomics and Proteomics, 90095-1570, USA.
Journal: Nucleic Acids Res. 32 Database issue:D449-51
Publication Date: Thursday, December 18, 2003
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IntAct: an open source molecular interaction database.
by Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, Apweiler R.
Affliation: European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK. hhe@ebi.ac.uk
Journal: Nucleic Acids Res. 32 Database issue:D452-5
Publication Date: Thursday, December 18, 2003
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MitoP2, an integrated database on mitochondrial proteins in yeast and man.
by Andreoli C, Prokisch H, Hörtnagel K, Mueller JC, Münsterkötter M, Scharfe C, Meitinger T.
Affliation: Institute of Human Genetics, GSF National Research Center for Environment and Health, Neuherberg, Germany.
Journal: Nucleic Acids Res. 32 Database issue:D459-62
Publication Date: Thursday, December 18, 2003
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MitoProteome: mitochondrial protein sequence database and annotation system.
by Cotter D, Guda P, Fahy E, Subramaniam S.
Affliation: San Diego Supercomputer Center, University of California, 9500 Gilman Drive, San Diego, CA 92037, USA.
Journal: Nucleic Acids Res. 32 Database issue:D463-7
Publication Date: Thursday, December 18, 2003
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Ensembl 2004.
by Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.
Affliation: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Journal: Nucleic Acids Res. 32 Database issue:D468-70
Publication Date: Thursday, December 18, 2003
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The Mouse SAGE Site: database of public mouse SAGE libraries.
by Divina P, Forejt J.
Affliation: Centre for Integrated Genomics, Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Vídenská 1083, CZ-142 20, Prague 4, Czech Republic.
Journal: Nucleic Acids Res. 32 Database issue:D482-3
Publication Date: Thursday, December 18, 2003
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PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
by Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T.
Affliation: Genome Research Department, National Institute of Agrobiological Sciences, 2 Ikenodai, Tsukuba, Ibaraki 305-8602, Japan. huenishi@affrc.go.jp
Journal: Nucleic Acids Res. 32 Database issue:D484-8
Publication Date: Thursday, December 18, 2003
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AluGene: a database of Alu elements incorporated within protein-coding genes.
by Dagan T, Sorek R, Sharon E, Ast G, Graur D.
Affliation: Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel. tali@kimura.tau.ac.il
Journal: Nucleic Acids Res. 32 Database issue:D489-92
Publication Date: Thursday, December 18, 2003
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The UCSC Table Browser data retrieval tool.
by Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ.
Affliation: Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA. donnak@soe.ucsc.edu
Journal: Nucleic Acids Res. 32 Database issue:D493-6
Publication Date: Thursday, December 18, 2003
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Human protein reference database as a discovery resource for proteomics.
by Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A.
Affliation: McKusick-Nathans Institute of Genetic Medicine and Department of Biological Chemistry, Johns Hopkins University, Baltimore, MD 21287, USA.
Journal: Nucleic Acids Res. 32 Database issue:D497-501
Publication Date: Thursday, December 18, 2003
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HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE.
by Kikuno R, Nagase T, Nakayama M, Koga H, Okazaki N, Nakajima D, Ohara O.
Affliation: Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba, 292-0818, Japan. kikuno@kazusa.or.jp
Journal: Nucleic Acids Res. 32 Database issue:D502-4
Publication Date: Thursday, December 18, 2003
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LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system.
by Bannasch D, Mehrle A, Glatting KH, Pepperkok R, Poustka A, Wiemann S.
Affliation: German Cancer Research Center (DKFZ), Division of Molecular Genome Analysis, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany. d.bannasch@dkfz.de
Journal: Nucleic Acids Res. 32 Database issue:D505-8
Publication Date: Thursday, December 18, 2003
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