Automatic prediction of protein function.
by Rost B, Liu J, Nair R, Wrzeszczynski KO, Ofran Y.
Affliation: Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, New York 10032, USA. rost@columbia.edu
Journal: Cell Mol Life Sci. 60(12):2637-50
Publication Date: Friday, December 19, 2003
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In silico study of breast cancer associated gene 3 using LION Target Engine and other tools.
by León DA, C naves JM.
Affliation: LION Bioscience, San Diego, CA, USA. darryl.leon@lionbioscience.com
Journal: Biotechniques. 35(6):1222-6, 1228, 1230-1
Publication Date: Friday, December 19, 2003
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Bioinformatic insight into the unity and diversity of cytochromes P450.
by Lisitsa A, Archakov A, Lewi P, Janssen P.
Affliation: Institute of Biomedical Chemistry RAMS, 119121 Moscow, Russia. fox@ibmh.msk.su
Journal: Methods Find Exp Clin Pharmacol. 25(9):733-45
Publication Date: Friday, December 19, 2003
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[Gene prediction and function research of SARS-CoV(BJ01)]
by Chen TG, Wu SF, Wan P, Du CJ, Li JQ, Li D, Wei GZ, Li B, Wang ZS, Xue XF, Zhu YP, He FC.
Affliation: Laboratory of Systems Biology, Beijing Institute of Radiation Medicine, Beijing 100850, China. chentg@hupo.org.cn
Journal: Yi Chuan Xue Bao. 30(8):773-80
Publication Date: Friday, December 19, 2003
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Maize genome sequencing by methylation filtration.
by Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR.
Affliation: Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Journal: Science. 302(5653):2115-7
Publication Date: Friday, December 19, 2003
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Enrichment of gene-coding sequences in maize by genome filtration.
by Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.
Affliation: The Institute for Genomic Research (TIGR), 9712 Medical Center Drive, Rockville, MD 20850, USA.
Journal: Science. 302(5653):2118-20
Publication Date: Friday, December 19, 2003
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BioSPICE: access to the most current computational tools for biologists.
by Garvey TD, Lincoln P, Pedersen CJ, Martin D, Johnson M.
Affliation: SRI International, Menlo Park, California 94025, USA.
Journal: OMICS. 2003 Winter;7(4):411-20
Publication Date: Friday, December 19, 2003
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SNP500Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes.
by Packer BR, Yeager M, Staats B, Welch R, Crenshaw A, Kiley M, Eckert A, Beerman M, Miller E, Bergen A, Rothman N, Strausberg R, Chanock SJ.
Affliation: Intramural Research Support Program, SAIC-Frederick, NCI-FCRDC, Frederick, MD, USA. packerb@mail.nih.gov
Journal: Nucleic Acids Res. 32 Database issue:D528-32
Publication Date: Thursday, December 18, 2003
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GenePaint.org: an atlas of gene expression patterns in the mouse embryo.
by Visel A, Thaller C, Eichele G.
Affliation: Max Planck Institute of Experimental Endocrinology, Feodor-Lynen-Strasse 7, D-30625 Hannover, Germany.
Journal: Nucleic Acids Res. 32 Database issue:D552-6
Publication Date: Thursday, December 18, 2003
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GermOnline, a cross-species community knowledgebase on germ cell differentiation.
by Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, Dumitrescu T, Fellous M, Goldman A, Grootegoed JA, Hawley R, Ishii R, Jégou B, Kaufman RJ, Klein F, Lamb N, Maro B, Nasmyth K, Nicolas A, Orr-Weaver T, Philippsen P, Pineau C, Rabitsch KP, Reinke V, Roest H, Saunders W, Schröder M, Schedl T, Siep M, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Esposito RE
Affliation: Biozentrum and Swiss Institute of Bioinformatics, Basel, Switzerland.
Journal: Nucleic Acids Res. 32 Database issue:D560-7
Publication Date: Thursday, December 18, 2003
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Hembase: browser and genome portal for hematology and erythroid biology.
by Goh SH, Lee YT, Bouffard GG, Miller JL.
Affliation: Laboratory of Chemical Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, 9000 Rockville Pike, MD 20892, USA.
Journal: Nucleic Acids Res. 32 Database issue:D572-4
Publication Date: Thursday, December 18, 2003
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NASCArrays: a repository for microarray data generated by NASC's transcriptomics service.
by Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S.
Affliation: The Nottingham Arabidopsis Stock Centre, Division of Plant Sciences, University of Nottingham, Sutton Bonington LE12 5RD, UK.
Journal: Nucleic Acids Res. 32 Database issue:D575-7
Publication Date: Thursday, December 18, 2003
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GELBANK: a database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.
by Babnigg G, Giometti CS.
Affliation: Protein Mapping Group, Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA.
Journal: Nucleic Acids Res. 32 Database issue:D582-5
Publication Date: Thursday, December 18, 2003
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Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine.
by Watkinson JI, Sioson AA, Vasquez-Robinet C, Shukla M, Kumar D, Ellis M, Heath LS, Ramakrishnan N, Chevone B, Watson LT, van Zyl L, Egertsdotter U, Sederoff RR, Grene R.
Affliation: Department of Plant Pathology, Virginia Tech, Blacksburg, Virginia 24061, USA.
Journal: Plant Physiol. 133(4):1702-16
Publication Date: Thursday, December 18, 2003
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Finding unexpected patterns in microarray data.
by Perelman S, Mazzella MA, Muschietti J, Zhu T, Casal JJ.
Affliation: IFEVA, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, 1417-Buenos Aires, Argentina.
Journal: Plant Physiol. 133(4):1717-25
Publication Date: Thursday, December 18, 2003
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Identification of multiple genetic loci that regulate adenovirus gene therapy.
by Zhang HG, Hsu HC, Yang PA, Yang X, Wu Q, Liu Z, Yi N, Mountz JD.
Affliation: Department of Medicine, Division of Clinical Immunology and Rheumatology, The University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Journal: Gene Ther. 11(1):4-14
Publication Date: Thursday, December 18, 2003
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The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.
by Chen J, Zhao P, Massaro D, Clerch LB, Almon RR, DuBois DC, Jusko WJ, Hoffman EP.
Affliation: Center for Genetic Medicine, Children's National Medical Center, 111 Michigan Avenue NW, Washington, DC 20010, USA.
Journal: Nucleic Acids Res. 32 Database issue:D578-81
Publication Date: Thursday, December 18, 2003
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ANTIMIC: a database of antimicrobial sequences.
by Brahmachary M, Krishnan SP, Koh JL, Khan AM, Seah SH, Tan TW, Brusic V, Bajic VB.
Affliation: Institute of Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613.
Journal: Nucleic Acids Res. 32 Database issue:D586-9
Publication Date: Thursday, December 18, 2003
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APD: the Antimicrobial Peptide Database.
by Wang Z, Wang G.
Affliation: Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, 986805 Nebraska Medical Center, Omaha, NE 68198-6805, USA.
Journal: Nucleic Acids Res. 32 Database issue:D590-2
Publication Date: Thursday, December 18, 2003
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ORFDB: an information resource linking scientific content to a high-quality Open Reading Frame (ORF) collection.
by Liang F, Matrubutham U, Parvizi B, Yen J, Duan D, Mirchandani J, Hashima S, Nguyen U, Ubil E, Loewenheim J, Yu X, Sipes S, Williams W, Wang L, Bennett R, Carrino J.
Affliation: Research and Development, Invitrogen Corporation, Carlsbad, CA 92008, USA.
Journal: Nucleic Acids Res. 32 Database issue:D595-9
Publication Date: Thursday, December 18, 2003
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