BLASTing proteomes, yielding phylogenies.
by Fuellen G, Spitzer M, Cullen P, Lorkowski S.
Affliation: Integrated Functional Genomics, IZKF, University Hospital Münster (Hautklinik), Germany. fuellen@uni-muenster.de
Journal: In Silico Biol. 3(3):313-9
Publication Date: Wednesday, December 31, 2003
PubMed citation
|
Topological analysis of metabolic networks based on Petri net theory.
by Zevedei-Oancea I, Schuster S.
Affliation: Max Delbrueck Center for Molecular Medicine, Department of Bioinformatics Robert-Roessle-Str 10, 13092 Berlin-Buch, Germany.
Journal: In Silico Biol. 3(3):323-45
Publication Date: Wednesday, December 31, 2003
PubMed citation
|
Complete sequencing and characterization of 21,243 full-length human cDNAs.
by Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya
Affliation: Helix Research Institute, 1532-3 Yana, Kisarazu, Chiba 292-0812, Japan.
Journal: Nat Genet. 12 2003;36(1):40-5
Publication Date: Wednesday, December 31, 2003
PubMed citation
|
SOLVE and RESOLVE: automated structure solution and density modification.
by Terwilliger TC.
Affliation: Los Alamos National Laboratory, Los Alamos, New Mexico 87545.
Journal: Methods Enzymol. 374:22-37
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Automatic solution of heavy-atom substructures.
by Weeks CM, Adams PD, Berendzen J, Brunger AT, Dodson EJ, Grosse-Kunstleve RW, Schneider TR, Sheldrick GM, Terwilliger TC, Turkenburg MG, Usón I.
Affliation: Hauptman-Woodward Medical Research Institute, 73 High Street, Buffalo, New York 14203, USA.
Journal: Methods Enzymol. 374:37-83
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences.
by Petrey D, Honig B.
Affliation: Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.
Journal: Methods Enzymol. 374:492-509
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins.
by Tropsha A, Carter CW, Cammer S, Vaisman II.
Affliation: Department of Medicinal Chemistry and Natural Products, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.
Journal: Methods Enzymol. 374:509-44
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences.
by Krebs WG, Tsai J, Alexandrov V, Junker J, Jansen R, Gerstein M.
Affliation: San Diego Supercomputer Center, University of California San Diego, La Jolla, California 92093, USA.
Journal: Methods Enzymol. 374:544-84
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Anti-osteoactivin antibody inhibits osteoblast differentiation and function in vitro.
by Selim AA, Abdelmagid SM, Kanaan RA, Smock SL, Owen TA, Popoff SN, Safadi FF.
Affliation: Department of Anatomy and Cell Biology, Temple University, School of Medicine, Philadelphia, PA 19140, USA.
Journal: Crit Rev Eukaryot Gene Expr. 13(2-4):265-75
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Prediction of mammalian microRNA targets.
by Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB.
Affliation: Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Journal: Cell. 115(7):787-98
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Chromosome positional effects of gene expressions after cellular senescence.
by Chen HL, Lu CY, Hsu YH, Lin JJ.
Affliation: Institute of Biopharmaceutical Science, National Yang-Ming University, Shih-Pai, 112 Taipei, Taiwan, ROC.
Journal: Biochem Biophys Res Commun. 313(3):576-86
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Applications of microarray and bioinformatics tools to dissect molecular responses of the central nervous system to antioxidant micronutrients.
by Gohil K, Chakraborty AA.
Affliation: Center for Comparative Respiratory Biology and Medicine, Department of Internal Medicine, University of California, Davis, California 95616, USA. kgohil@ucdavis.edu
Journal: Nutrition. 20(1):50-5
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Nutritional genomics in yeast models.
by Liu Y, Sturley SL.
Affliation: Institute of Human Nutrition, Department of Pediatrics, Columbia University College of Physicians & Surgeons, New York, New York 10032, USA.
Journal: Nutrition. 20(1):166-72
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Are residues in a protein folding nucleus evolutionarily conserved?
by Tseng YY, Liang J.
Affliation: Department of Bioengineering, SEO, MC-063, University of Illinois at Chicago, 851 S. Morgan Street, Room 218, Chicago, IL 60607-7052, USA.
Journal: J Mol Biol. 335(4):869-80
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
A novel database of disulfide patterns and its application to the discovery of distantly related homologs.
by van Vlijmen HW, Gupta A, Narasimhan LS, Singh J.
Affliation: Structural Informatics Group, Biogen Inc., 14 Cambridge Center, Cambridge, MA 02142, USA.
Journal: J Mol Biol. 335(4):1083-92
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Computational analysis of evolution and conservation in a protein superfamily.
by Irving JA, Askew DJ, Whisstock JC.
Affliation: Victorian Bioinformatics Consortium, and Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton, Vic, Australia. james.irving@med.monash.edu.au
Journal: Methods. 32(2):73-92
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Phylogenomic analysis and evolution of the potassium channel gene family.
by Moulton G, Attwood TK, Parry-Smith DJ, Packer JC.
Affliation: School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, United Kingdom. gmoulton@bioinf.man.ac.uk
Journal: Receptors Channels. 9(6):363-77
Publication Date: Tuesday, December 30, 2003
PubMed citation
|
Amplification and overexpression of the IGF2 regulator PLAG1 in hepatoblastoma.
by Zatkova A, Rouillard JM, Hartmann W, Lamb BJ, Kuick R, Eckart M, von Schweinitz D, Koch A, Fonatsch C, Pietsch T, Hanash SM, Wimmer K.
Affliation: Institut für Medizinische Biologie, Universität Wien, Vienna, Austria.
Journal: Genes Chromosomes Cancer. 39(2):126-37
Publication Date: Monday, December 29, 2003
PubMed citation
|
Effective scoring function for protein sequence design.
by Liang S, Grishin NV.
Affliation: Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas 75390-9050, USA.
Journal: Proteins. 54(2):271-81
Publication Date: Monday, December 29, 2003
PubMed citation
|
Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.
by Kuhn M, Meiler J, Baker D.
Affliation: California Institute of Technology, Pasadena, USA.
Journal: Proteins. 54(2):282-8
Publication Date: Monday, December 29, 2003
PubMed citation
|
|
|
|