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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - November, 2003

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Molecular Evolution: evolution, genomics, bioinformatics. Sorrento, Italy, 13-16 June 2002. Proceedings of a symposium.
by
Affliation:
Journal: Gene. 317(1-2):1-213
Publication Date: Friday, November 07, 2003
PubMed citation

LDH-A and alpha-actin as tools to assess the effects of temperature on the vertebrate genome: some problems.
by Clay O, Arhondakis S, D'Onofrio G, Bernardi G.
Affliation: Laboratorio di Evoluzione Molecolare, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.
Journal: Gene. 317(1-2):157-60
Publication Date: Friday, November 07, 2003
PubMed citation

A model for the speed of memory retrieval.
by Landa P, Kaplan A, Zhukovskaya E.
Affliation: Department of Physics, Lomonosov Moscow State University, 119899 Moscow, Russia.
Journal: Biol Cybern. 10 2003;89(4):313-6
Publication Date: Friday, November 07, 2003
PubMed citation

Order, disorder, and flexibility: prediction from protein sequence.
by Iakoucheva LM, Dunker AK.
Affliation: The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.
Journal: Structure (Camb). 11(11):1316-7
Publication Date: Friday, November 07, 2003
PubMed citation

Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.
by Kent AD, Smith DJ, Benson BJ, Triplett EW.
Affliation: Microbial Observatory of the North Temperate Lakes Long-Term Ecological Research Site (NTL-LTER), Center for Limnology, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Journal: Appl Environ Microbiol. 69(11):6768-76
Publication Date: Thursday, November 06, 2003
PubMed citation

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria.
by Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, Wagner EG.
Affliation: Institute of Cell and Molecular Biology, Biomedical Center, Uppsala University, Box 596, 75124 Uppsala, Sweden. joerg.vogel@icm.uu.se
Journal: Nucleic Acids Res. 31(22):6435-43
Publication Date: Thursday, November 06, 2003
PubMed citation

Enzyme-specific profiles for genome annotation: PRIAM.
by Claudel-Renard C, Chevalet C, Faraut T, Kahn D.
Affliation: Laboratoire de Génétique Cellulaire, INRA, INRA/CNRS, BP27, 31326 Castanet-Tolosan Cedex, France.
Journal: Nucleic Acids Res. 31(22):6633-9
Publication Date: Thursday, November 06, 2003
PubMed citation

Proteomics and new therapeutic strategies.
by Armandola EA.
Affliation: European Patent Office, Munich, Germany.
Journal: MedGenMed. 5(2):21
Publication Date: Thursday, November 06, 2003
PubMed citation

Meeting report: Incorporating genomics research into undergraduate curricula.
by Dyer BD, LeBlanc MD.
Affliation: Department of Biology, Wheaton College, Norton, Massachusetts 02766, USA. bdyer@wheatoncollege.edu
Journal: Cell Biol Educ. 2002 Winter;1(4):101-4
Publication Date: Tuesday, November 04, 2003
PubMed citation

Identifying novel helix-loop-helix genes in Caenorhabditis elegans through a classroom demonstration of functional genomics.
by Griffin V, McMiller T, Jones E, Johnson CM.
Affliation: Department of Biology, Morgan State University, 1700 East Coldspring Lane, Baltimore, Maryland 21251, USA.
Journal: Cell Biol Educ. 2003 Spring;2(1):51-62
Publication Date: Tuesday, November 04, 2003
PubMed citation

Public access for teaching genomics, proteomics, and bioinformatics.
by Campbell AM.
Affliation: Biology Department, Davidson College, Box 7118, Davidson, North Carolina 28035-7118, USA. macampbell@davidson.edu
Journal: Cell Biol Educ. 2003 Summer;2(2):98-111
Publication Date: Tuesday, November 04, 2003
PubMed citation



Bioinformatics analysis of experimentally determined protein complexes in the yeast Saccharomyces cerevisiae.
by Dezso Z, Oltvai ZN, Barabási AL.
Affliation: Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556, USA.
Journal: Genome Res. 10 2003;13(11):2450-4
Publication Date: Tuesday, November 04, 2003
PubMed citation

Selection and validation of microarray candidate genes from subregions and subnuclei of the brain.
by Zirlinger M.
Affliation: Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Ave., Cambridge, MA 02138, USA. zirlinger@mcb.harvard.edu
Journal: Methods. 31(4):290-300
Publication Date: Tuesday, November 04, 2003
PubMed citation

Characterization and transcriptional profiles of three Spodoptera frugiperda genes encoding cysteine-rich peptides. A new class of defensin-like genes from lepidopteran insects?
by Volkoff AN, Rocher J, d'Alençon E, Bouton M, Landais I, Quesada-Moraga E, Vey A, Fournier P, Mita K, Devauchelle G.
Affliation: Laboratoire de Pathologie Compar?ée, UMR 5087 INRA-CNRS/Universite Montpellier II, 30380 Saint-Christol-les-Alès, France. volkoff@ensam.inra.fr
Journal: Gene. 319:43-53
Publication Date: Tuesday, November 04, 2003
PubMed citation

The strength of translational selection for codon usage varies in the three replicons of Sinorhizobium meliloti.
by Peixoto L, Zavala A, Romero H, Musto H.
Affliation: Laboratorio de Organización y Evolución del Genoma, Facultad de Ciencias, Iguá 4225, Montevideo 11400, Uruguay.
Journal: Gene. 320:109-16
Publication Date: Tuesday, November 04, 2003
PubMed citation

Barnacle: an assembly algorithm for clone-based sequences of whole genomes.
by Choi V, Farach-Colton M.
Affliation: Department of Computer Science, Rutgers University, Piscataway, NJ 08854, USA. vchoi@cs.duke.edu
Journal: Gene. 320:165-76
Publication Date: Tuesday, November 04, 2003
PubMed citation

Systems biology is taking off.
by Ehrenberg M, Elf J, Aurell E, Sandberg R, Tegnér J.
Affliation: Department of Cell and Molecular Biology, Uppsala University, BMC, 751-24 Uppsala, Sweden. ehrenberg@xray.bmc.uu.se
Journal: Genome Res. 13(11):2377-80
Publication Date: Tuesday, November 04, 2003
PubMed citation

A biophysical approach to transcription factor binding site discovery.
by Djordjevic M, Sengupta AM, Shraiman BI.
Affliation: Department of Physics, Columbia University, New York, New York 10025, USA.
Journal: Genome Res. 13(11):2381-90
Publication Date: Tuesday, November 04, 2003
PubMed citation

Limitations of quantitative gene regulation models: a case study.
by Kim PM, Tidor B.
Affliation: Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Journal: Genome Res. 13(11):2391-5
Publication Date: Tuesday, November 04, 2003
PubMed citation

Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network.
by Zak DE, Gonye GE, Schwaber JS, Doyle FJ.
Affliation: Department of Chemical Engineering, University of Delaware, Newark, Delaware 19716, USA.
Journal: Genome Res. 13(11):2396-405
Publication Date: Tuesday, November 04, 2003
PubMed citation

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