Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets.
by Abergel C, Coutard B, Byrne D, Chenivesse S, Claude JB, Deregnaucourt C, Fricaux T, Gianesini-Boutreux C, Jeudy S, Lebrun R, Maza C, Notredame C, Poirot O, Suhre K, Varagnol M, Claverie JM.
Affliation: Structural and Genomic Information Laboratory, UMR 1889 CNRS-AVENTIS, 13402 Marseille cedex 20, France. Chantal.Abergel@igs.cnrs-mrs.fr
Journal: J Struct Funct Genomics. 4(2-3):141-57
Publication Date: Thursday, November 27, 2003
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Dissecting the transcription networks of a cell using computational genomics.
by Li H, Wang W.
Affliation: Department of Biochemistry and Biophysics, University of California at San Francisco, 600 16th Street, San Francisco, CA 94143-2240, USA. haoli@genome.ucsf.edu
Journal: Curr Opin Genet Dev. 13(6):611-6
Publication Date: Tuesday, November 25, 2003
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How far have we reached in tuberculosis vaccine development?
by Kumar H, Malhotra D, Goswami S, Bamezai RN.
Affliation: National Centre of Applied Human Genetics, School of Life Sciences, Jawaharlal Nehru University, New Delhi-110 067, India.
Journal: Crit Rev Microbiol. 29(4):297-312
Publication Date: Tuesday, November 25, 2003
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A structure-based anatomy of the E.coli metabolome.
by Nobeli I, Ponstingl H, Krissinel EB, Thornton JM.
Affliation: EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. nobeli@ebi.ac.uk
Journal: J Mol Biol. 334(4):697-719
Publication Date: Tuesday, November 25, 2003
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Molecular cloning and characterization of AP-2 epsilon, a fifth member of the AP-2 family.
by Tummala R, Romano RA, Fuchs E, Sinha S.
Affliation: Department of Biochemistry, State University of New York at Buffalo, 3435 Main Street, 121 Farber Hall, Buffalo, NY 14214, USA.
Journal: Gene. 321:93-102
Publication Date: Tuesday, November 25, 2003
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mRNA 5' region sequence incompleteness: a potential source of systematic errors in translation initiation codon assignment in human mRNAs.
by Casadei R, Strippoli P, D'Addabbo P, Canaider S, Lenzi L, Vitale L, Giannone S, Frabetti F, Facchin F, Carinci P, Zannotti M.
Affliation: Center for Research into Molecular Genetics Fondazione CARISBO, Institute of Histology and General Embryology, University of Bologna, Via Belmeloro, 8-40126 Bologna, Italy.
Journal: Gene. 321:185-93
Publication Date: Tuesday, November 25, 2003
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Sampling effects and the robustness of quantitative and qualitative food-web descriptors.
by Banasek-Richter C, Cattin MF, Bersier LF.
Affliation: Zoological Institute, University of Neuchâtel, Rue Emile-Argand 11 CP2, CH-2007 Neuchâtel, Switzerland.
Journal: J Theor Biol. 226(1):23-32
Publication Date: Tuesday, November 25, 2003
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A mathematical model of the methionine cycle.
by Reed MC, Nijhout HF, Sparks R, Ulrich CM.
Affliation: Department of Mathematics, Duke University, Durham, NC 27708, USA. reed@math.duke.edu
Journal: J Theor Biol. 226(1):33-43
Publication Date: Tuesday, November 25, 2003
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A computational model for collagen fibre remodelling in the arterial wall.
by Driessen NJ, Wilson W, Bouten CV, Baaijens FP.
Affliation: Department of Biomedical Engineering, Laboratory of Biomechanics and Tissue Engineering, Eindhoven University of Technology, PO Box 513, Building Whoog 4.112, 5600 MB Eindhoven, The Netherlands. n.j.b.driessen@tue.nl
Journal: J Theor Biol. 226(1):53-64
Publication Date: Tuesday, November 25, 2003
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Rational proteomics I. Fingerprint identification and cofactor specificity in the short-chain oxidoreductase (SCOR) enzyme family.
by Duax WL, Pletnev V, Addlagatta A, Bruenn J, Weeks CM.
Affliation: Hauptman-Woodward Medical Research Institute and Department of Structural Biology, SUNY at Buffalo, Buffalo, New York, USA. duax@hwi.buffalo.edu
Journal: Proteins. 53(4):931-43
Publication Date: Monday, November 24, 2003
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A reduced protein model with accurate native-structure identification ability.
by Betancourt MR.
Affliation: University at Buffalo Center of Excellence in Bioinformatics, Buffalo, New York 14203, USA.
Journal: Proteins. 53(4):889-907
Publication Date: Monday, November 24, 2003
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Better prediction of sub-cellular localization by combining evolutionary and structural information.
by Nair R, Rost B.
Affliation: CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032 , USA. nair@cubic.bioc.columbia.edu
Journal: Proteins. 53(4):917-30
Publication Date: Monday, November 24, 2003
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Solving the 3-SAT problem based on DNA computing.
by Liu W, Gao L, Liu X, Wang S, Xu J.
Affliation: Department of Control Science and Engineering, Huazhong University of Science and Technology, Wuhan City 430074, China. wbliu@mail.hust.edu.cn
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):1872-5
Publication Date: Monday, November 24, 2003
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Comparison of support vector machine and artificial neural network systems for drug/nondrug classification.
by Byvatov E, Fechner U, Sadowski J, Schneider G.
Affliation: Institut für Organische Chemie und Chemische Biologie, Johann Wolfgang Goethe-Universität, Marie-Curie-Strasse 11, D-60439 Frankfurt, Germany.
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):1882-9
Publication Date: Monday, November 24, 2003
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Spline-fitting with a genetic algorithm: a method for developing classification structure-activity relationships.
by Sutherland JJ, O'Brien LA, Weaver DF.
Affliation: Departments of Chemistry and Pathology, Queen's University, Kingston, Ontario, Canada K7L 3N6.
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):1906-15
Publication Date: Monday, November 24, 2003
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DNA sequence design based on template strategy.
by Liu W, Wang S, Gao L, Zhang F, Xu J.
Affliation: Department of Control Science and Engineering, Huazhong University of Science and Technology, Wuhan City 430074, China. wbliu@mail.hust.edu.cn
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):2014-8
Publication Date: Monday, November 24, 2003
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Drug discovery using support vector machines. The case studies of drug-likeness, agrochemical-likeness, and enzyme inhibition predictions.
by Zernov VV, Balakin KV, Ivaschenko AA, Savchuk NP, Pletnev IV.
Affliation: Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1, 119899 GSP-3 Moscow, Russia.
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):2048-56
Publication Date: Monday, November 24, 2003
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Multimode ligand binding in receptor site modeling: implementation in CoMFA.
by Lukacova V, Balaz S.
Affliation: College of Pharmacy and Center for Protease Research, North Dakota State University, Sudro Hall 8, Fargo, North Dakota 58105, USA.
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):2093-105
Publication Date: Monday, November 24, 2003
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Classification of diverse organic compounds that induce chromosomal aberrations in Chinese hamster cells.
by McElroy NR, Thompson ED, Jurs PC.
Affliation: Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):2111-9
Publication Date: Monday, November 24, 2003
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ChipCheck--a program predicting total hybridization equilibria for DNA binding to small oligonucleotide microarrays.
by Siegmund KH, Steiner UE, Richert C.
Affliation: Institute for Organic Chemistry, University of Karlsruhe (TH), D-76128 Karlsruhe, Germany.
Journal: J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):2153-62
Publication Date: Monday, November 24, 2003
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